PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe1G030200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | bHLH | ||||||||
Protein Properties | Length: 403aa MW: 44076.1 Da PI: 7.8968 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.6 | 9.3e-13 | 335 | 380 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k + a++L +AveYIk+Lq Aqcoe1G030200.1.p 335 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVEYIKELQ 380 689*********************7....688*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.193 | 329 | 379 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.06E-16 | 332 | 390 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.82E-12 | 333 | 384 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 9.5E-16 | 334 | 390 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.9E-13 | 335 | 385 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.0E-9 | 335 | 380 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 403 aa Download sequence Send to blast |
MDANLLRQQQ MNSGLLRYRS APSSLFANFM DGEDDFIASH HRSSSPEAES MFARFMNCGD 60 STSPSLHEIG EKSAIKAEVS VGNNRSSSQF LGVIDEHESE QILFNTPPPL PQPPKQQAPM 120 SNHASNVAEN VYRVASSMGL DHQSSQMKMG NSNLIRHSSS PAGLFANLNV ENGYAVMRGI 180 GNFGAGNSTN EAASTRRLKN QMNYPSGPPS SSGLMSPISE VGSESIGTCA GDGGSVGNSN 240 VSNQYPPNFP LNSWEDSALE NFTSLKRFRD ADTKMHSGLN SSEPENPEAG NQTRNLTHHF 300 SLPKTSVEMA AILQFQDSVP CKIRAKRGCA THPRSIAERV RRTRISERMR KLQELVPNMD 360 KQTNTADMLD LAVEYIKELQ KQVKKLNDNR ATCTCSSKQK PY* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00646 | PBM | Transfer from LOC_Os08g39630 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_026414452.1 | 1e-143 | transcription factor bHLH130-like | ||||
TrEMBL | A0A2G5ECZ3 | 0.0 | A0A2G5ECZ3_AQUCA; Uncharacterized protein | ||||
STRING | Aquca_009_00280.1 | 0.0 | (Aquilegia coerulea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42280.1 | 5e-77 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe1G030200.1.p |