PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G030100.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family C3H
Protein Properties Length: 736aa    MW: 80022.2 Da    PI: 5.9938
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G030100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.78.1e-08309329526
                        --SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                        +C+ f++ G C++Gd C +aHg
  Aqcoe1G030100.1.p 309 PCPEFRK-GACRRGDLCEYAHG 329
                        8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484037.15E-1537165IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.208.0E-1685165IPR020683Ankyrin repeat-containing domain
PfamPF127961.8E-885153IPR020683Ankyrin repeat-containing domain
SMARTSM002480.06885115IPR002110Ankyrin repeat
CDDcd002041.35E-1285163No hitNo description
PROSITE profilePS5029715.00885193IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0015120152IPR002110Ankyrin repeat
PROSITE profilePS5008811.007120155IPR002110Ankyrin repeat
SMARTSM003562.9E-5304330IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-5309329IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.568309331IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.4E-4337367IPR000571Zinc finger, CCCH-type
SMARTSM0035667339362IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 736 aa     Download sequence    Send to blast
MCVGPEQSQT TSTQSSSDSA GIEPITKDMN HLTVETEDSF SSLLELAANN DIDGFKRSID  60
RDVSAIDEVG LWYGRQKGSK QMVLEHRTPL MVAATYGSVD VLQVILSLSE VDVNRSCGPD  120
KSTALHCAAS GGSVLAVEVV KLLLLSGADP NCVDASGRCP ADVIVVSPKL PDLRVSLEEL  180
LTNNGSYGSA VEHNLRIVTA TSNSNSPSLS SSPDNGSPSS DSDSTSSPMM KYNDLPTSLM  240
SERKEYPIDP SLPDIKNSIY ATDEFRMFSF KVRPCSRAYS HDWTECPFVH PGENARRRDP  300
RKFHYSCVPC PEFRKGACRR GDLCEYAHGV FECWLHPAQY RTRLCKDGTS CMRRVCFFAH  360
TTEELRPLYV STGSAVPSPR SAASAAMEMA AALSLLPASP SSGSVMSPSP FTPPMSPSAS  420
NISHSSMAWP QPNVPTLHLP GSNLQSSRLR SSLNARDIQT DDYNMLADYE LQQQHQQLLN  480
ELSCFSQPRM IPNSANRPIR TKSLAPSNLD DLFSAELSSS PRYSDQSMSS AVFSPSHKSA  540
VLNQFQQQQS MLSPINTNVF SPKNVDHHLL QASFGGVHSP GRMSPRSMEP ISPMSSRASA  600
FSQREKLHQQ QQLHSLSSRE LGSITSGGAG SPGNSWTKWG SPNGKLDWAV NGDELGPQRR  660
TTSFEPGNNG EEPDLSWVQS LVKESPPEIK EKPVVQNSAT AFSGENSNSN TQIESVDHAV  720
LGAWLEQMQL DQLVA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018842333.10.0PREDICTED: zinc finger CCCH domain-containing protein 30-like
RefseqXP_018842334.10.0PREDICTED: zinc finger CCCH domain-containing protein 30-like
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A2G5ECT90.0A0A2G5ECT9_AQUCA; Uncharacterized protein
STRINGAquca_009_00279.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]