PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco031754.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family SBP
Protein Properties Length: 269aa    MW: 30220 Da    PI: 9.8901
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco031754.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP126.51e-39153230177
                  --SSTT-----TT--HHHHHTT--HHHHT-S-EEET.TEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
          SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvs.gleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                  +Cq++gC+adls+ak+yhrrhkvCe+h+ka++v+++ gl+qrfCqqCsrfh+l+efD++k+sCr+rLa+hn+rrrk +
  Aco031754.1 153 RCQADGCRADLSRAKRYHRRHKVCEFHAKAAMVVINgGLQQRFCQQCSRFHSLEEFDDNKKSCRKRLADHNRRRRKLK 230
                  6****************************9988765279************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.2E-32148216IPR004333Transcription factor, SBP-box
PROSITE profilePS5114130.137151229IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.67E-36152231IPR004333Transcription factor, SBP-box
PfamPF031108.3E-31154228IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MMNVPDSAES FVPSIITLAG MEETTMQRDH HHQLWPLEAS TQQISSNSIA PLSNSIIAAP  60
HTPDLQFQPY SQYLHEYPQF QQSNFQLYYP PQPSISDYNF TGLARPVEDH VSIAPSPQLG  120
LGLNLGYGSY LSSRDVLFRS RWGYPFAHHQ PPRCQADGCR ADLSRAKRYH RRHKVCEFHA  180
KAAMVVINGG LQQRFCQQCS RFHSLEEFDD NKKSCRKRLA DHNRRRRKLK PASSAAGTAS  240
PAGATTQKRK LANKTVTKSS KPLDSNPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A8e-301542281184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1211228KKSCRKRLADHNRRRRKL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that plays an important role in building the laminar joint between leaf blade and leaf sheath boundary, thereby controlling ligule and auricle development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020110253.10.0protein LIGULELESS 1-like
SwissprotQ01KM72e-53SPL8_ORYSI; Squamosa promoter-binding-like protein 8
TrEMBLA0A199UG901e-174A0A199UG90_ANACO; Squamosa promoter-binding-like protein 8
STRINGSi022315m4e-58(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69903452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.15e-38squamosa promoter binding protein-like 8