PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco030561.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family bHLH
Protein Properties Length: 179aa    MW: 19680.2 Da    PI: 8.9312
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco030561.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.62.1e-0897143454
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  +h+ +Er RR+riN+++  L+el+P +     k +  a +L + ++Y++sL
  Aco030561.1  97 SHSVAERLRRERINERMRCLQELVPGC----YKEMGMAGMLDEIINYVQSL 143
                  8*************************8....36688899999999999888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.50E-991148No hitNo description
SuperFamilySSF474591.83E-1691161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.90493143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-1693155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-597143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-899149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MGLHNNSPLT HENTSPSTVE ISWGHIKKKG EAAAPDSSQS SATPRLENGY SQENVARKKS  60
SLGGGGGGRR GRRCSKEEKK AKEVVHVEAR RGQATDSHSV AERLRRERIN ERMRCLQELV  120
PGCYKEMGMA GMLDEIINYV QSLKNQVEFL SMKLSAASSF YDFNLDCDQP MAAPQVLL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1102107RLRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020080726.11e-121transcription factor BEE 3-like
TrEMBLA0A2H3YEZ16e-59A0A2H3YEZ1_PHODC; transcription factor bHLH75-like isoform X1
STRINGXP_008797805.11e-59(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15639615
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18400.11e-35BR enhanced expression 1