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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Aco030142.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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| Family | MIKC_MADS | ||||||||
| Protein Properties | Length: 175aa MW: 19557.3 Da PI: 7.4455 | ||||||||
| Description | MIKC_MADS family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | SRF-TF | 91.8 | 3.3e-29 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
rien + rqvtfskRrng+lKKA+ELSvLCdaeva++ifs gklye++s
Aco030142.1 10 RIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALVIFSAAGKLYEFAS 59
8***********************************************86 PP
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| 2 | K-box | 51.6 | 4e-18 | 61 | 123 | 36 | 98 |
K-box 36 RhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98
+l G ++es+sl+eL+ Le qLe+sl+kiRskK++ +l++i el++ke l +en Lr+k+
Aco030142.1 61 EKLCGGGVESCSLEELHDLEAQLERSLSKIRSKKQRKILQEITELKEKESLLLKENALLREKV 123
5899*********************************************************98 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SMART | SM00432 | 2.3E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
| PROSITE profile | PS50066 | 31.076 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
| PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 5.19E-36 | 3 | 60 | No hit | No description |
| SuperFamily | SSF55455 | 2.62E-27 | 3 | 61 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 8.6E-30 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 2.3E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
| PROSITE profile | PS51297 | 9.181 | 12 | 129 | IPR002487 | Transcription factor, K-box |
| PRINTS | PR00404 | 8.6E-30 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 8.6E-30 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF01486 | 1.7E-17 | 59 | 123 | IPR002487 | Transcription factor, K-box |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 175 aa Download sequence Send to blast |
MVRGRREMRR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVALVIFSA AGKLYEFASS 60 EKLCGGGVES CSLEELHDLE AQLERSLSKI RSKKQRKILQ EITELKEKES LLLKENALLR 120 EKVRTQLLPS VPDQHLIPDD QPNGNMEVET DLIIGRPGTG EAQQQLANSS ETSH* |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 5f28_A | 3e-17 | 1 | 61 | 1 | 61 | MEF2C |
| 5f28_B | 3e-17 | 1 | 61 | 1 | 61 | MEF2C |
| 5f28_C | 3e-17 | 1 | 61 | 1 | 61 | MEF2C |
| 5f28_D | 3e-17 | 1 | 61 | 1 | 61 | MEF2C |
| 6byy_A | 3e-17 | 1 | 61 | 1 | 61 | MEF2 CHIMERA |
| 6byy_B | 3e-17 | 1 | 61 | 1 | 61 | MEF2 CHIMERA |
| 6byy_C | 3e-17 | 1 | 61 | 1 | 61 | MEF2 CHIMERA |
| 6byy_D | 3e-17 | 1 | 61 | 1 | 61 | MEF2 CHIMERA |
| 6bz1_A | 3e-17 | 1 | 61 | 1 | 61 | MEF2 CHIMERA |
| 6bz1_B | 3e-17 | 1 | 61 | 1 | 61 | MEF2 CHIMERA |
| 6bz1_C | 3e-17 | 1 | 61 | 1 | 61 | MEF2 CHIMERA |
| 6bz1_D | 3e-17 | 1 | 61 | 1 | 61 | MEF2 CHIMERA |
| Search in ModeBase | ||||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Probable transcription factor active in flowering time control. May control internode elongation and promote floral transition phase. May act upstream of the floral regulators MADS1, MADS14, MADS15 and MADS18 in the floral induction pathway. {ECO:0000269|PubMed:15144377, ECO:0000269|PubMed:17166135}. | |||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_020112449.1 | 1e-114 | MADS-box transcription factor 50-like isoform X2 | ||||
| Swissprot | Q9XJ60 | 3e-48 | MAD50_ORYSJ; MADS-box transcription factor 50 | ||||
| TrEMBL | A0A199V993 | 1e-86 | A0A199V993_ANACO; MADS-box transcription factor 50 | ||||
| STRING | XP_008794766.1 | 9e-54 | (Phoenix dactylifera) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP1413 | 33 | 79 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G22950.1 | 8e-41 | AGAMOUS-like 19 | ||||
| Link Out ? help Back to Top | |
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| Phytozome | Aco030142.1 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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