PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco030108.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MYB
Protein Properties Length: 271aa    MW: 30995.6 Da    PI: 9.7575
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco030108.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.78.3e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+ Ed+ lv +++ +G g W + +++ g++R++k+c++rw++yl
      Aco030108.1 14 RGAWTAVEDKMLVSYITAHGEGKWGSLPKRAGLKRCGKSCRLRWLNYL 61
                     89********************************************97 PP
2Myb_DNA-binding51.13.1e-1667111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+ T eE+el+++++ +lG++ W++Ia++++ gRt++++k++w++ 
      Aco030108.1  67 RGNITCEEEELIIRLHMLLGNR-WSLIAARLP-GRTDNEIKNYWNTT 111
                      788899****************.*********.************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-21564IPR009057Homeodomain-like
PROSITE profilePS5129414.157961IPR017930Myb domain
SuperFamilySSF466896.64E-2811108IPR009057Homeodomain-like
SMARTSM007177.3E-121363IPR001005SANT/Myb domain
PfamPF002491.5E-131461IPR001005SANT/Myb domain
CDDcd001673.67E-81661No hitNo description
PROSITE profilePS5129423.70262116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.2E-2465115IPR009057Homeodomain-like
SMARTSM007175.8E-1566114IPR001005SANT/Myb domain
PfamPF002491.5E-1467111IPR001005SANT/Myb domain
CDDcd001674.06E-1173112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MGKKPCCSKE GLKRGAWTAV EDKMLVSYIT AHGEGKWGSL PKRAGLKRCG KSCRLRWLNY  60
LRPGIKRGNI TCEEEELIIR LHMLLGNRWS LIAARLPGRT DNEIKNYWNT TLAKRVDNQS  120
NRPPRPVTPL LKNPVKCPIN TKPHKITTKK PPPPPLTNPN IIKTKALRCK MTFFSHDQEH  180
NPEMDPRESQ EAPRTPRPDS SIDRPITRVD SGTDRSLDLL SSRQVGVEEE ERKNNLGSLR  240
DEFGTFDAEL SEYFMLDYHS PLLDLEEQWF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-25121175109B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020080658.10.0transcription factor TT2-like
TrEMBLA0A199VIA31e-107A0A199VIA3_ANACO; Anthocyanin regulatory C1 protein
STRINGGSMUA_Achr10P17610_0015e-82(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.18e-59MYB family protein