PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco029094.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | MYB_related | ||||||||
Protein Properties | Length: 357aa MW: 39027.4 Da PI: 9.4488 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 39.5 | 1.3e-12 | 56 | 100 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +W++ E++++++a +++ + Wk+I + +g +t q++s+ qky Aco029094.1 56 RESWSEVEHDKFLEALHLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 100 789*****************77.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.77E-15 | 50 | 106 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.81 | 51 | 105 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 1.5E-16 | 54 | 103 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 3.9E-5 | 54 | 106 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.7E-10 | 55 | 103 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-10 | 56 | 100 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.63E-8 | 58 | 101 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 357 aa Download sequence Send to blast |
MLSATPVAAA HGGAYPPPPF APPTPMVAAG AAAALPCSLE DPSRKVRKPY TITKSRESWS 60 EVEHDKFLEA LHLFDRDWKK IEAFVGSKTV IQIRSHAQKY FLKVQKNGMS EHVPPPRPKR 120 KAAHPYPQKA PKNAAIITQA VAPSPASSLV LEPCYTVSSD SSTVVRNSTS NATLSSCVNG 180 SVQPFSAAQM TKVPSEAIMA NNCCSRTESP TEVWLASETT EKENQVPFLR VMPDFSQVYS 240 FLAGVFDPNT SGHLEKLKEM DPIDVETVLL LMRNLSANLT SPDFEAHRRL LSTYGSGTEE 300 ANSNSFSNLL QASRTPNSQG GGRVKRTEES LNVMYSLRSE KKAVVSKHFY FTLLRK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00625 | PBM | Transfer from PK02532.1 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020114839.1 | 0.0 | protein REVEILLE 5-like isoform X2 | ||||
Swissprot | C0SVG5 | 3e-98 | RVE5_ARATH; Protein REVEILLE 5 | ||||
TrEMBL | A0A199W472 | 0.0 | A0A199W472_ANACO; Protein REVEILLE 5 | ||||
STRING | XP_008794784.1 | 1e-132 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1096 | 38 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01280.2 | 4e-87 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Aco029094.1 |
Publications ? help Back to Top | |||
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