PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Aco028479.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
|
||||||||
Family | YABBY | ||||||||
Protein Properties | Length: 137aa MW: 15073.1 Da PI: 9.0021 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 145.9 | 4.2e-45 | 3 | 128 | 23 | 159 |
YABBY 23 avsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsenedeevprvppvirPPe 120 vsvPs+s+f ++tvrCG Ct+llsv++ +q ++ + ++++ ++++++ ++ ++s+ +++s l+ + +++ ++ p PPe Aco028479.1 3 QVSVPSNSMFDILTVRCGNCTNLLSVDMGAVTQKIPLQGS--------QVHNIGSHHDHNSVDCGGSSSKC-NRRSPVLD-SIQNDPHKTLP-TPPPE 89 69******************************99999886........56666666655444444333333.33333333.33333333334.68*** PP YABBY 121 krqrvPsaynrfikeeiqrikasnPdishreafsaaakn 159 krqrvPsaynrfikeeiqrika+nPdishreafs+aakn Aco028479.1 90 KRQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKN 128 **************************************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 2.4E-47 | 3 | 128 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 4.84E-7 | 78 | 126 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 137 aa Download sequence Send to blast |
MTQVSVPSNS MFDILTVRCG NCTNLLSVDM GAVTQKIPLQ GSQVHNIGSH HDHNSVDCGG 60 SSSKCNRRSP VLDSIQNDPH KTLPTPPPEK RQRVPSAYNR FIKEEIQRIK ANNPDISHRE 120 AFSTAAKNGN MLLFYM* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KM663674 | 4e-37 | KM663674.1 Ananas bracteatus clone 48195 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020085769.1 | 2e-87 | axial regulator YABBY 5-like isoform X3 | ||||
Swissprot | Q10FZ7 | 3e-40 | YAB2_ORYSJ; Protein YABBY 2 | ||||
TrEMBL | A0A199VWT0 | 3e-84 | A0A199VWT0_ANACO; Protein YABBY 2 | ||||
STRING | XP_008778120.1 | 1e-50 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1394 | 37 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G26580.2 | 4e-41 | YABBY family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Aco028479.1 |