PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco027896.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | bHLH | ||||||||
Protein Properties | Length: 454aa MW: 49913.1 Da PI: 5.9121 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.2 | 2.5e-12 | 243 | 294 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r +h ++Er+RR+ +N+ ++ Lr+l+P++ ++ + a+i A++++k+L+ Aco027896.1 243 QRLTHIAVERNRRRLMNDHLAALRSLIPPS---FVQRGDQASIIGGAIDFVKELE 294 699**************************9...9******************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.13E-12 | 241 | 297 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.0E-12 | 242 | 296 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.894 | 242 | 293 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.7E-14 | 242 | 306 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.3E-10 | 243 | 294 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.7E-10 | 248 | 299 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 454 aa Download sequence Send to blast |
MRATAGTSVH VVKANKVEPF YETAASGSCQ FPALLPLFGA AAPMERLQGP INPFLGGEEM 60 NSECLETGVA NSNSAVEMSY LSLISSHHHR HHHHHRQTPF LQLLLRGAMG VETAGEDEEE 120 EEEEEEEEEE EEERLHSQSL LPSYPSESQF QLLQLQSNCG KRDRTAEIDV FSAAAAPVPV 180 EQLESCISHA SESQSDVRRL GHDHNEKKVE IIMATAAAPR AKKKRKRARA SGSAKKPEEV 240 ETQRLTHIAV ERNRRRLMND HLAALRSLIP PSFVQRGDQA SIIGGAIDFV KELEQLLLSL 300 RAQKRIRTSA ASSFRCTASD EAHDPTQEGA VLDGFFFSPQ YTTYSQQQRR RLQQEGEEKM 360 AAAVFGVDVE AKVVQGHVSL KVAGPRRAGQ LARAIAAVEE LRLSVLHLNI ASLDESSVLY 420 SLNLKMEEDC RLGSADEVAA AVHQIFTCIN AGC* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020084143.1 | 0.0 | transcription factor bHLH57-like isoform X3 | ||||
TrEMBL | A0A199VKN1 | 0.0 | A0A199VKN1_ANACO; Transcription factor bHLH57 | ||||
STRING | XP_008797639.1 | 1e-126 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7957 | 33 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01460.1 | 1e-57 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Aco027896.1 |