PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco027879.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MIKC_MADS
Protein Properties Length: 231aa    MW: 25899.6 Da    PI: 9.1243
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco027879.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF76.71.8e-241059251
                 ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 +i+n + rqvtf kRr g++KKAeEL vLCda+va+i+fsstgk + ++s
  Aco027879.1 10 KIDNATARQVTFLKRRRGLFKKAEELAVLCDADVALIVFSSTGKHFQFAS 59
                 69******************************************999975 PP
2K-box53.11.4e-1881170998

  




Protein Features
? help Back to Top



3D Structure
 

Database
Entry ID
E-value
Start
End
InterPro ID
Description



PROSITE profilePS5006628.651161IPR002100Transcription factor, MADS-box
SMARTSM004323.7E-36160IPR002100Transcription factor, MADS-box
CDDcd002651.41E-36277No hitNo description
PRINTSPR004041.1E-24323IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.71E-29374IPR002100Transcription factor, MADS-box
PfamPF003193.4E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-242338IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-243859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129712.38886179IPR002487Transcription factor, K-box
PfamPF014861.7E-1689170IPR002487Transcription factor, K-box

 





Gene Ontology ? help Back to Top




GO Term
GO Category
GO Description



GO:0009266Biological Processresponse to temperature stimulus
GO:0009910Biological Processnegative regulation of flower development
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048438Biological Processfloral whorl development
GO:0005634Cellular Componentnucleus
GO:0000900Molecular Functiontranslation repressor activity, nucleic acid binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity

 
 




Sequence ? help Back to Top




Protein Sequence    Length: 231 aa    
Download sequence    Send
to blast





MAREKIQIRK IDNATARQVT FLKRRRGLFK KAEELAVLCD ADVALIVFSS TGKHFQFASS  60
SMNQIIEKHS LHSKNLQKAE QPSIDLNVEQ NTYTRLSKEI AEASLQLRQM RGEELHKLTI  120
HELQQLEKTL EIGLGRVLER KSEQIMEEIS SLKQKSAALM EKNTQLKEQV VKIAKTGRKQ  180
MVNDSEHVLH EDGQSSESIT NASLSGAPPD YCGDSSDTSL RLGLAISSWK *





  




3D Structure ? help Back to Top



Structure
 




PDB ID
Evalue
Query Start
Query End
Hit Start
Hit End
Description



5f28_A2e-20173173MEF2C
5f28_B2e-20173173MEF2C
5f28_C2e-20173173MEF2C
5f28_D2e-20173173MEF2C
 
Search in ModeBase

   

 
  
  







Functional Description  ? help
Back to Top




Source
Description



UniProtPutative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.
 










Binding Motif
? help Back to Top




Motif ID
Method
Source
Motif file



MP00272DAPTransfer from AT2G22540Download



Motif logo












Regulation -- PlantRegMap  ? help
Back to Top




Source
Upstream Regulator
Target Gene



PlantRegMapRetrieveRetrieve
 






 




Annotation --
Nucleotide ? help
Back to Top




Source
Hit ID
E-value
Description



GenBankKM6609557e-71KM660955.1 Ananas bracteatus clone 40252 microsatellite sequence.

 




Annotation -- Protein
? help Back to Top




Source
Hit ID
E-value
Description



RefseqXP_020080356.11e-168MADS-box protein JOINTLESS-like 
SwissprotQ9FUY63e-90JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBLA0A199V0U41e-160A0A199V0U4_ANACO; MADS-box protein JOINTLESS
STRINGVIT_00s0313g00070.t012e-99(Vitis vinifera)

 





Orthologous Group
? help Back to Top



LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12213697
  




Best hit in Arabidopsis thaliana ? help
Back to Top




Hit ID
E-value
Description



AT2G22540.13e-90MIKC_MADS family protein


 

 




Publications
? help Back to Top






    

  1. Nakano T,Kato H,Shima Y,Ito Y
    Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities.
    Plant Cell Physiol., 2015. 56(6): p. 1097-106
    [PMID:25746985]
    2.