PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco026955.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family B3
Protein Properties Length: 254aa    MW: 29518 Da    PI: 10.5197
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco026955.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.37.7e-1513891899
                 --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                 +p++ ae     k+++ t tl ++ g+ W ++l +r +++r ++ +GW+eF +a++L +gDfv+F+++g++ f  + kvf++
  Aco026955.1 13 IPRPIAELLT--KKRNATATLFSPLGKFWHITL-VRDGDDRLYFDNGWREFSQAHELVAGDFVLFRYEGNMVF--KAKVFDT 89
                 7888875444..447789***************.6888889****************************9999..7777775 PP
2B357.91.8e-181722491498
                  T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                   +l++p +f +++g+     ++++l+d++ rsW v+l  +++++   + +GW+eF+  n+L+egD ++F+l++  ++e++v +++
  Aco026955.1 172 LCLSVPMSFRSSYGLLR---REIVLKDPKKRSWPVTL--WNGKRDSRIHRGWREFAVGNNLEEGDKCIFQLIS--SGEMRVLIRK 249
                  3489*********9873...47***************..9999999************************986..7778999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.225190IPR003340B3 DNA binding domain
SMARTSM010199.5E-8990IPR003340B3 DNA binding domain
SuperFamilySSF1019361.43E-19992IPR015300DNA-binding pseudobarrel domain
CDDcd100173.00E-131388No hitNo description
Gene3DG3DSA:2.40.330.106.7E-181392IPR015300DNA-binding pseudobarrel domain
PfamPF023621.3E-111387IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.0E-23148250IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.24E-19150249IPR015300DNA-binding pseudobarrel domain
CDDcd100172.96E-19153249No hitNo description
SMARTSM010191.6E-9155251IPR003340B3 DNA binding domain
PROSITE profilePS5086313.183159251IPR003340B3 DNA binding domain
PfamPF023627.0E-16173249IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MFLSRKMEFW NPIPRPIAEL LTKKRNATAT LFSPLGKFWH ITLVRDGDDR LYFDNGWREF  60
SQAHELVAGD FVLFRYEGNM VFKAKVFDTS GCRKLRGKIV HRVSKRSLGE TKDENRDDIR  120
SYDQQDTEEP RTPPGFSAKK KSVENENSAP CPPHFEKIMR SCNVSGNIRR RLCLSVPMSF  180
RSSYGLLRRE IVLKDPKKRS WPVTLWNGKR DSRIHRGWRE FAVGNNLEEG DKCIFQLISS  240
GEMRVLIRKR CCA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1187198RREIVLKDPKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020102506.11e-180putative B3 domain-containing protein Os04g0347400 isoform X1
TrEMBLA0A199UHD51e-175A0A199UHD5_ANACO; Putative B3 domain-containing protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.17e-17B3 family protein