PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco026878.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | bHLH | ||||||||
Protein Properties | Length: 250aa MW: 27829.3 Da PI: 8.076 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.4 | 6e-09 | 82 | 111 | 1 | 30 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 1 rrrahnerErrRRdriNsafeeLrellPka 30 +r++h ++Er+RR+ +N+ ++ Lr+l+P + Aco026878.1 82 QRMTHIAVERNRRRLMNDHLAVLRSLMPDS 111 79**************************85 PP | |||||||
2 | HLH | 29.6 | 1.3e-09 | 121 | 151 | 1 | 31 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC. CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkas 31 +r++h ++Er+RR+ +N+ ++ Lr+l+P ++ Aco026878.1 121 QRMTHIAVERNRRRLMNDHLAVLRSLMPDSY 151 79**************************964 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 6.54E-8 | 73 | 112 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.19E-7 | 80 | 115 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 5.0E-8 | 80 | 115 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.1E-6 | 82 | 111 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.2 | 87 | 122 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.94E-8 | 119 | 170 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.2E-8 | 119 | 156 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.3E-9 | 120 | 186 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 11.338 | 120 | 170 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.7E-7 | 121 | 151 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.085 | 126 | 176 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MSSTLGGLCS SELPSFFIYD TINATQLHYT NPSESAAVLG PAPPEAAAAA AVEQQQMRVQ 60 GGKRKRRRRP RSGGSKEEVE SQRMTHIAVE RNRRRLMNDH LAVLRSLMPD SYIQREEVES 120 QRMTHIAVER NRRRLMNDHL AVLRSLMPDS YIQRGDQLNV GGAIDYVKEH GAYSSSLDAL 180 QKEDHYCCST RSSKHPLTHN DGSCAISPPF RPSFFACTPS IPCCATGLAK DYPFPRESDP 240 PWPDIEVTS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 62 | 67 | KRKRRR |
2 | 62 | 68 | KRKRRRR |
3 | 63 | 67 | RKRRR |
4 | 63 | 70 | RKRRRRPR |
5 | 121 | 132 | RMTHIAVERNRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC137608 | 3e-33 | AC137608.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0009C07, complete sequence. | |||
GenBank | AP014961 | 3e-33 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012613 | 3e-33 | CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A199VZF4 | 7e-66 | A0A199VZF4_ANACO; Transcription factor bHLH96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01460.1 | 3e-23 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Aco026878.1 |