PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco026868.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

C3H

Protein Properties

Length: 270aa MW: 30192.6 Da PI: 8.058

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco026868.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.9	5.4e-06	119	139	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C +f+r GtC++ d C +aH+ Aco026868.1 119 PCLDFHR-GTCRRSDMCEYAHS 139 699**.***********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	11.413	119	141	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	7.5E-4	146	177	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
LHTDLPDLKP SLLRLFLYHH PLASENRAPT PPPPPSIPPQ LPRKKKERER EFAVVVGDPS 60 SLPDIKNSVY ATDEFRMYSF KVRPCSRVYS YDWTECPFVH PGENARRRDP RKYHYSCMPC 120 LDFHRGTCRR SDMCEYAHSV FECLLHPAQY RTRICKDGLA CACRICFFAH ALDELRSLFV 180 STGSAVPSPR SSDMPPPNFM PSASPSSSSS VPSVGMPPLL LPAPAKAAEE EDNDDESGDS 240 RAIFFVRMRR GFLGAEAEKP APKLAVVVI*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023739533.1	3e-80	zinc finger CCCH domain-containing protein 30
Refseq	XP_023739534.1	3e-80	zinc finger CCCH domain-containing protein 30
Swissprot	Q10EL1	2e-79	C3H24_ORYSJ; Zinc finger CCCH domain-containing protein 24
TrEMBL	A0A2J6K339	6e-79	A0A2J6K339_LACSA; Uncharacterized protein
STRING	EMT08668	2e-79	(Aegilops tauschii)
STRING	Traes_4BS_382B98EB8.2	2e-79	(Triticum aestivum)
STRING	TRIUR3_07445-P1	3e-79	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP823	37	126

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	8e-80	CCCH-type zinc finger protein with ARM repeat domain

Link Out ? help Back to Top
Phytozome	Aco026868.1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]