PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco026420.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MYB_related
Protein Properties Length: 335aa    MW: 35855.1 Da    PI: 9.1767
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco026420.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.47e-13104148347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+  ++ + ++lG+g+W+ I+r +  +Rt+ q+ s+ qky
      Aco026420.1 104 AWTEEEHRMFLVGLHKLGKGDWRGISRNFVITRTPTQVASHAQKY 148
                      7*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501589.3721228IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129419.70197153IPR017930Myb domain
SuperFamilySSF466896.28E-1799154IPR009057Homeodomain-like
TIGRFAMsTIGR015577.3E-18100152IPR006447Myb domain, plants
SMARTSM007171.2E-10101151IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-10102147IPR009057Homeodomain-like
PfamPF002491.5E-11104148IPR001005SANT/Myb domain
CDDcd001673.18E-9104149No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MRGDSGGDGA MRRCSQCGNN GHNARTCPGR GVRLFGVRIA EGSIRKSVSM GNISHYAAAI  60
GGASPGDGGA AAAAAVAECG DGYASEGFEA GNASARRERK KGVAWTEEEH RMFLVGLHKL  120
GKGDWRGISR NFVITRTPTQ VASHAQKYFI RQSNSSRRKR RSSLFDMVTD EPADIQLHPT  180
TSQELEEKGI NTQPALLVHQ EEHKPTGSSS NDGERDFPKA ENFSRTYPVI FPAYFPPFVT  240
FPYPSWPIYG SAETVEKAHQ IIKPTAVHSK APLNVDDLVG MSQLSLGAKS SAENRVSPLS  300
LEVLHGSGRQ SAFHAKLPAS CSSIGSPDSP IHAV*
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6664011e-106KM666401.1 Ananas bracteatus clone 51700 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020114705.10.0transcription factor MYB1R1-like
SwissprotQ7XC571e-113MYBS3_ORYSJ; Transcription factor MYBS3
TrEMBLA0A199UXU30.0A0A199UXU3_ANACO; Transcription factor MYB1R1 (Fragment)
STRINGXP_008790110.11e-120(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19393791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.13e-86MYB_related family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Su CF, et al.
    A novel MYBS3-dependent pathway confers cold tolerance in rice.
    Plant Physiol., 2010. 153(1): p. 145-58
    [PMID:20130099]