PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco025803.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family B3
Protein Properties Length: 291aa    MW: 33556.6 Da    PI: 10.0425
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco025803.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.88.2e-13481142798
                  ---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3  27 ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  +++   + t tl ++ gr W + l  +  ++++ +++GW+eF +a++  +gDf++F+++g++ f  +vkvf+
  Aco025803.1  48 MHQ--HNETATLFSPLGRFWHIALEKDADDNMH-FSNGWREFSRAHDFTAGDFLLFRYEGNMVF--KVKVFD 114
                  444..34489999***********666666555.789***************************..999998 PP
2B364.31.8e-20198284295
                  EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
           B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                  + + +++++++ g +++p+kf++++g+   ++ +++led++ rsW vkl  + + +   l +GWkeF   n+L+egD ++F+l+++     +v 
  Aco025803.1 198 E-KIIRPYNFSCGHMSVPRKFCASNGLT--RKEEMVLEDPKRRSWHVKL--WHGVSDSRLLSGWKEFSAVNKLEEGDKCTFQLVSDGIL--RVL 284
                  3.456999*****************998..4559***************..66655656777********************9875544..443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.3E-193118IPR015300DNA-binding pseudobarrel domain
CDDcd100171.67E-134114No hitNo description
SMARTSM010195.2E-76116IPR003340B3 DNA binding domain
SuperFamilySSF1019365.1E-1936118IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.57639116IPR003340B3 DNA binding domain
PfamPF023621.2E-939114IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.1E-25193287IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.87E-23193287IPR015300DNA-binding pseudobarrel domain
CDDcd100173.90E-20195285No hitNo description
PROSITE profilePS5086314.198196289IPR003340B3 DNA binding domain
SMARTSM010193.7E-16197289IPR003340B3 DNA binding domain
PfamPF023622.6E-18198285IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MIKPQFVKVL LPEFLEKLLL EIAFGLKWLR KLRRGSEPIP DAIAQLLMHQ HNETATLFSP  60
LGRFWHIALE KDADDNMHFS NGWREFSRAH DFTAGDFLLF RYEGNMVFKV KVFDVTGCRK  120
QYDRAISEKR SFGAKDEILE DVCDGMCNSD DWQNLSTGRR KRGKPTAPKE QLQTPPGFLA  180
TDKSATKNNR ARTVPHFEKI IRPYNFSCGH MSVPRKFCAS NGLTRKEEMV LEDPKRRSWH  240
VKLWHGVSDS RLLSGWKEFS AVNKLEEGDK CTFQLVSDGI LRVLIQKRRA *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020102990.10.0putative B3 domain-containing protein Os04g0347400
TrEMBLA0A199UHD80.0A0A199UHD8_ANACO; Putative B3 domain-containing protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.12e-19B3 family protein