PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco025349.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

FAR1

Protein Properties

Length: 409aa MW: 46505.6 Da PI: 8.7484

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco025349.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	83.1	4.5e-26	100	191	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn+YA ++GFs+rk++++k k+++ +t +++Cskeg+ +++++ ++ +++ + trtgCka++++k++++gkw+vt++++eHnH l Aco025349.1 100 SFYNAYALKTGFSIRKASHYKAkKKDEMVTGLHLTCSKEGHYKPRHEIeVDDPQKEMQYTRTGCKAHIRIKMTSSGKWKVTRFVKEHNHVLI 191 5*****************99567788999********9998745667788999****************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.5E-24	100	191	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence Send to blast
CPFMEGVTEE ERSGKVDNRT NDKEAGMTTN NIQFTQFQDQ EPENLMANLS YIENMEMNSP 60 LIEKSQLDQE GPILLVADNE CLGDEPFIGL EFKDADHAYS FYNAYALKTG FSIRKASHYK 120 AKKKDEMVTG LHLTCSKEGH YKPRHEIEVD DPQKEMQYTR TGCKAHIRIK MTSSGKWKVT 180 RFVKEHNHVL INSPSKSRFL RSQRSMTKQQ KDLVRMLSEQ NISSSQIMSF IAAREGGAHN 240 VRFTRKDLSN VRRSFNIQSI QHEAMGDSMH AKAIRSNALS QQVQEIVHQG AKSFGSFELI 300 CQLIKRVVEE IVSYNQASNE IQGKEVEEFN VVPLTQTSDL DVAMKDPPQS QCKGKRKPQR 360 FKPSAEKRAK KFRTCAKCKK KGQNVRTCKE VAPGDAYFDV DVNESNSE*

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence Send to blast

CPFMEGVTEE ERSGKVDNRT NDKEAGMTTN NIQFTQFQDQ EPENLMANLS YIENMEMNSP  60
LIEKSQLDQE GPILLVADNE CLGDEPFIGL EFKDADHAYS FYNAYALKTG FSIRKASHYK  120
AKKKDEMVTG LHLTCSKEGH YKPRHEIEVD DPQKEMQYTR TGCKAHIRIK MTSSGKWKVT  180
RFVKEHNHVL INSPSKSRFL RSQRSMTKQQ KDLVRMLSEQ NISSSQIMSF IAAREGGAHN  240
VRFTRKDLSN VRRSFNIQSI QHEAMGDSMH AKAIRSNALS QQVQEIVHQG AKSFGSFELI  300
CQLIKRVVEE IVSYNQASNE IQGKEVEEFN VVPLTQTSDL DVAMKDPPQS QCKGKRKPQR  360
FKPSAEKRAK KFRTCAKCKK KGQNVRTCKE VAPGDAYFDV DVNESNSE*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A199VUV4	1e-176	A0A199VUV4_ANACO; Protein FAR1-RELATED SEQUENCE 5 (Fragment)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	5e-26	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Aco025349.1