PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco024766.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family GRAS
Protein Properties Length: 311aa    MW: 33096.1 Da    PI: 5.173
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco024766.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS30.74e-10102162158
         GRAS   1 lvelLlecAeavss..gdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvs 58 
                  lv+lL+ +Aea++   ++ ela+ +L rl+el+s +g ++m+Rlaa+ft AL+  l+r+ +
  Aco024766.1 102 LVHLLMGAAEALTGphRSRELARVILVRLKELVSTAGgSNMERLAAHFTDALQGLLTRTAD 162
                  689*********98546777************9999879*****************99443 PP
2GRAS41.32.4e-13212268317373
         GRAS 317 erleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslvlgWkdrpLvsvSaW 373
                   +++ +GFk v +s ++ +qa+lll  ++ dgyrvee+  + lvlgWk ++L+s+S+W
  Aco024766.1 212 XWMRGVGFKGVDISCFNHCQARLLLGLFN-DGYRVEEDgPNKLVLGWKAQRLLSASVW 268
                  46999************************.******99568899************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035141.4E-7102162IPR005202Transcription factor GRAS
PfamPF035148.2E-11212268IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MEEGGDLEIS GCGSTTTTTT VDDDIGYWNH WSPVADLGTF CANDHEFRSL MESMMSDDMD  60
CEDGVGALTD AACTPSVTTT TGSTSTGLPA DEPSHDEKGM RLVHLLMGAA EALTGPHRSR  120
ELARVILVRL KELVSTAGGS NMERLAAHFT DALQGLLTRT ADLLLAQPAR WFARGPRPGV  180
ARGPQPVRGA RGLHAARCSR PAARAWPARS EXWMRGVGFK GVDISCFNHC QARLLLGLFN  240
DGYRVEEDGP NKLVLGWKAQ RLLSASVWSP PPSPSLPASP ASVLPSAGGF VAGLGLEDYD  300
SFMIEPFGLV *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020105047.11e-107nodulation-signaling pathway 2 protein-like, partial
TrEMBLA0A199VZE44e-88A0A199VZE4_ANACO; Nodulation-signaling pathway 2 protein
STRINGOBART03G11490.12e-65(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75803148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-19GRAS family protein