PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco024544.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family AP2
Protein Properties Length: 417aa    MW: 44903.5 Da    PI: 7.0039
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco024544.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.17.8e-1269125155
          AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  s y+GV++++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  Aco024544.1  69 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEEKAARAYDLAALKYWG 125
                  57*******************5444.2455536655.779999**************98 PP
2AP247.64e-15170221155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Aco024544.1 170 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 221
                  57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.06E-1769135No hitNo description
SuperFamilySSF541713.14E-1569135IPR016177DNA-binding domain
PfamPF008472.7E-969125IPR001471AP2/ERF domain
SMARTSM003801.8E-2370139IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-1270134IPR001471AP2/ERF domain
PROSITE profilePS5103217.47770133IPR001471AP2/ERF domain
PRINTSPR003671.8E-67182IPR001471AP2/ERF domain
CDDcd000181.41E-23170231No hitNo description
SuperFamilySSF541715.36E-18170231IPR016177DNA-binding domain
PfamPF008475.0E-10170221IPR001471AP2/ERF domain
SMARTSM003807.9E-34171235IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-18171229IPR001471AP2/ERF domain
PROSITE profilePS5103219.045171229IPR001471AP2/ERF domain
PRINTSPR003671.8E-6211231IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0040019Biological Processpositive regulation of embryonic development
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MEEAEAEAEE EEERGAAAEL MAMAGVAGPE LKSITAGLCR SAAAEKATAP PPPPDSRGAA  60
AGSFGQRTSI YRGVTRHRWT GRYEAHLWDN SCRREGQSRK GRQGGYDKEE KAARAYDLAA  120
LKYWGPTTTT NFPVSDYEKQ LEEMKNMTRQ EFVASLRRYR KSSGFSRGAS IYRGVTRHHQ  180
HGRWQARIGR VAGNKDLYLG TFSTQEEAAE AYDIAAIKFR GLNAVTNFDI SRYDVKSIIS  240
GSLPIGGMSG RTSKASESSS SSDTISLQAK QQMELLPINQ DQDYWSLLAL HHHQQQQSDN  300
QALGLGFGGF SSGSGVTVDF SNASNGATMG QCSSLWNVSN VTAGQQHDQE QSQSSSCSSI  360
PFAAPLGFGS VGCYEGSNYG SAGTWVATPT PGASSYYAQG AKPNVAFLQT PIFGME*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6639301e-117KM663930.1 Ananas bracteatus clone 48583 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020112860.10.0AP2-like ethylene-responsive transcription factor AIL5
SwissprotQ6PQQ31e-123AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A199V2J60.0A0A199V2J6_ANACO; AP2-like ethylene-responsive transcription factor AIL5
STRINGXP_008803593.11e-164(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79738151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-117AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]