PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco024469.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

bHLH

Protein Properties

Length: 357aa MW: 39144.1 Da PI: 7.9155

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco024469.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.5	7.3e-11	60	109	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r++ + rE+ RRdr+N+ f+eL + l ++ +K++Ka+iL+ +++ +k+L Aco024469.1 60 RKVQKADREKLRRDRLNEQFQELGKALDPD----RPKNDKATILTDTIQMLKDL 109 5677889******************997....79**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	2.3E-12	59	132	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.07E-13	59	128	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	13.357	59	109	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.1E-8	60	109	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.53E-7	60	113	No hit	No description
SMART	SM00353	7.2E-7	65	115	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence Send to blast
MDQWKSTESL FPADHSSAAE IAGEVSRRRS GDAGPDRSQS PCPNPSQRVE YEARSSISAR 60 KVQKADREKL RRDRLNEQFQ ELGKALDPDR PKNDKATILT DTIQMLKDLT ARVNRLKAEC 120 ASLTEESREL TQEKNELRDE KATLKSEVDN LNTQYQQRIR VLYPWAAMDP SIMSLSPAYP 180 FPISVPIPSA PLAIHSSLPP FPFFRNPSSG PIPNPCSTFM PYSQLCHAQV DQLSSQQSQF 240 PHPSSSRSRP AGQQDSRNKS STHQQPSCGG ERSDNHSDVA TELELKTPGS VGPSHSKMAN 300 DKDLSSEMRK GKQRQPEKKE SGFAAEGSSS SRSSSSSGGV QQSSSNSVED GSVADK*

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence Send to blast

MDQWKSTESL FPADHSSAAE IAGEVSRRRS GDAGPDRSQS PCPNPSQRVE YEARSSISAR  60
KVQKADREKL RRDRLNEQFQ ELGKALDPDR PKNDKATILT DTIQMLKDLT ARVNRLKAEC  120
ASLTEESREL TQEKNELRDE KATLKSEVDN LNTQYQQRIR VLYPWAAMDP SIMSLSPAYP  180
FPISVPIPSA PLAIHSSLPP FPFFRNPSSG PIPNPCSTFM PYSQLCHAQV DQLSSQQSQF  240
PHPSSSRSRP AGQQDSRNKS STHQQPSCGG ERSDNHSDVA TELELKTPGS VGPSHSKMAN  300
DKDLSSEMRK GKQRQPEKKE SGFAAEGSSS SRSSSSSGGV QQSSSNSVED GSVADK*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020085317.1	0.0	transcription factor bHLH121
Swissprot	Q9LT23	3e-66	BH121_ARATH; Transcription factor bHLH121
TrEMBL	A0A199VIY5	0.0	A0A199VIY5_ANACO; Transcription factor bHLH121
STRING	XP_008788362.1	1e-130	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11767	25	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19860.1	3e-65	bHLH family protein

Link Out ? help Back to Top
Phytozome	Aco024469.1

Publications ? help Back to Top
Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]