PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco023288.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family NAC
Protein Properties Length: 349aa    MW: 39317.7 Da    PI: 7.1175
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco023288.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1707.6e-5371341128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 
                  lppGfrFhPtdeel+ +yL+++++++++++ ++i+evdiyk++Pw+Lp k+  +++ewyfFs+rd+ky++g r+nra+ sgyWkatg+dk++l++ ++
  Aco023288.1   7 LPPGFRFHPTDEELILHYLRNRAAATPCPV-SIIAEVDIYKFDPWNLPDKAVFGDREWYFFSPRDRKYPNGIRPNRAAGSGYWKATGTDKPILTSkGH 103
                  79****************************.89***************7777899*************************************998566 PP

          NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                   ++g+kk Lvfykg+ pkg kt+W+mheyrl
  Aco023288.1 104 DNIGVKKALVFYKGKPPKGIKTNWIMHEYRL 134
                  67***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-645166IPR003441NAC domain
PROSITE profilePS5100561.5837166IPR003441NAC domain
PfamPF023653.6E-278134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MSNPSSLPPG FRFHPTDEEL ILHYLRNRAA ATPCPVSIIA EVDIYKFDPW NLPDKAVFGD  60
REWYFFSPRD RKYPNGIRPN RAAGSGYWKA TGTDKPILTS KGHDNIGVKK ALVFYKGKPP  120
KGIKTNWIMH EYRLAEAQTS NNYRPMKFRD SSMRLDDWVL CRIYKKSSHI SSVPPLMEHE  180
QDDSSSEDIY SSSFRNFPEP SARLPKSSSI SEFLEDYSAL SHLFDNLPEV PGPEHGSLLS  240
NPSSNQLFIN TGSSMNNNNN NNLVVQQLTL SDQSSASVGE NSSKRQRASD GYNIEEENGF  300
FHPSKKLNDS CNAPNTFSNQ QFDGLQQSFL SQPFFGQQLL LNSHLGLH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-74616816167NO APICAL MERISTEM PROTEIN
1ut4_B3e-74616816167NO APICAL MERISTEM PROTEIN
1ut7_A3e-74616816167NO APICAL MERISTEM PROTEIN
1ut7_B3e-74616816167NO APICAL MERISTEM PROTEIN
4dul_A3e-74616816167NAC domain-containing protein 19
4dul_B3e-74616816167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000269|PubMed:24363315}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00333DAPTransfer from AT3G04070Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By root flooding (PubMed:24363315). Induced by senescence (PubMed:24659488). {ECO:0000269|PubMed:24363315, ECO:0000269|PubMed:24659488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6625711e-149KM662571.1 Ananas bracteatus clone 46398 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020085775.10.0NAC transcription factor 29-like
SwissprotQ84TD62e-92NAC47_ARATH; NAC transcription factor 47
TrEMBLA0A199VHF10.0A0A199VHF1_ANACO; NAC transcription factor 29
STRINGXP_008782759.11e-171(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123736123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.14e-93NAC domain containing protein 47
Publications ? help Back to Top
  1. Hofmann NR
    A NAC transcription factor for flooding: SHYG helps plants keep their leaves in the air.
    Plant Cell, 2013. 25(12): p. 4771
    [PMID:24363314]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]