PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco023084.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family HD-ZIP
Protein Properties Length: 295aa    MW: 32816.9 Da    PI: 4.6588
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco023084.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.43.2e-2057110356
                  --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  k++++t+eq++ Le  Fe+++++  e++ eLA+klgL+ rqV vWFqNrRa++k
  Aco023084.1  57 KKRRLTPEQVHLLEVSFEEENKLEPERKSELARKLGLQPRQVAVWFQNRRARWK 110
                  5678*************************************************9 PP
2HD-ZIP_I/II133.86.1e-4356147192
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  ekkrrl+ eqv+lLE sFeee+kLeperK+elar+LglqprqvavWFqnrRAR+ktkqlE+d+++Lk++yd+l +++++L k++++Lr+++ 
  Aco023084.1  56 EKKRRLTPEQVHLLEVSFEEENKLEPERKSELARKLGLQPRQVAVWFQNRRARWKTKQLERDFDRLKSSYDSLLADHDSLLKDNHHLRAQVI 147
                  69**************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.72E-1946114IPR009057Homeodomain-like
PROSITE profilePS5007117.79952112IPR001356Homeobox domain
SMARTSM003896.9E-2055116IPR001356Homeobox domain
PfamPF000462.1E-1757110IPR001356Homeobox domain
CDDcd000861.43E-1957113No hitNo description
Gene3DG3DSA:1.10.10.603.7E-2158119IPR009057Homeodomain-like
PRINTSPR000311.3E-68392IPR000047Helix-turn-helix motif
PROSITE patternPS00027087110IPR017970Homeobox, conserved site
PRINTSPR000311.3E-692108IPR000047Helix-turn-helix motif
PfamPF021831.6E-17112154IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001558Biological Processregulation of cell growth
GO:0009637Biological Processresponse to blue light
GO:0009651Biological Processresponse to salt stress
GO:0009965Biological Processleaf morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MDSGHLIFDS STTQHGQMLL LGGGNPIFRG GRSKRPFFTS PDDLLEEVYY DEQLPEKKRR  60
LTPEQVHLLE VSFEEENKLE PERKSELARK LGLQPRQVAV WFQNRRARWK TKQLERDFDR  120
LKSSYDSLLA DHDSLLKDNH HLRAQVISLT EKLQAKEAEA AAALGLKPEE KAPGSNLTEQ  180
TSTATVAALD APPKAEDRLS SGTGGSAVVD GEGAHHGLVV DSSGDSYFPE DYPCIAPVDG  240
GVQSEEDDGV SDEGCSYYAD TVFPAEHHHD GQQDHNHHHQ AAEEDEAQLD WWVW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104112RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00323DAPTransfer from AT3G01470Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020096032.10.0homeobox-leucine zipper protein HOX16-like isoform X2
SwissprotQ6YWR43e-90HOX16_ORYSJ; Homeobox-leucine zipper protein HOX16
TrEMBLA0A199WB390.0A0A199WB39_ANACO; Homeobox-leucine zipper protein HOX16
STRINGXP_008781998.11e-123(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26093887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.14e-68homeobox 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]