PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco022929.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family WOX
Protein Properties Length: 169aa    MW: 18168.4 Da    PI: 10.2196
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco022929.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.65.1e-1968129257
                  T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox   2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                  ++R+ +t+eq+++L +l+++   r p+ e+++++++ l    +++ ++V++WFqN++a+e++
  Aco022929.1  68 STRWIPTSEQIRILRDLYYNcgIRSPTSEQIQRISATLrrygKIEGKNVFYWFQNHKARERQ 129
                  58*****************8678*************************************97 PP
2Wus_type_Homeobox111.64.1e-3667131265
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ++tRW Pt+eQi+iL++ly+ +G+r+P++e+iqri+a+L++yGkie+kNVfyWFQN+kaRerqk+
        Aco022929.1  67 SSTRWIPTSEQIRILRDLYYnCGIRSPTSEQIQRISATLRRYGKIEGKNVFYWFQNHKARERQKK 131
                        789***************9769*****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.55E-1249131IPR009057Homeodomain-like
PROSITE profilePS5007110.31764130IPR001356Homeobox domain
SMARTSM003891.4E-566134IPR001356Homeobox domain
PfamPF000461.3E-1669129IPR001356Homeobox domain
CDDcd000862.21E-569131No hitNo description
Gene3DG3DSA:1.10.10.601.9E-770129IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0080166Biological Processstomium development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MEPYQYNAHH DQETAPPIPN TIGMGMGMGI GIGGGAGGGG GGLINSSKYS GSSSSSASSS  60
SMVCRQSSTR WIPTSEQIRI LRDLYYNCGI RSPTSEQIQR ISATLRRYGK IEGKNVFYWF  120
QNHKARERQK KRLSVDPNAA ATPSHNKPVT AAAAAVSSVS FPLYHILF*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that plays a central role during developmental processes such as early embryogenesis and flowering, probably by regulating expression of specific genes. Required to specify stem cell identity in meristems, such as shoot apical meristem (SAM). May induce shoot stem cells activity in order to maintain the stem cell identity (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00265DAPTransfer from AT2G17950Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC6111134e-47KC611113.1 Oryza meridionalis WUS (WUS) gene, partial cds.
GenBankKC6111204e-47KC611120.1 Oryza granulata WUS (WUS) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020114973.15e-73protein WUSCHEL-like
SwissprotQ6YBV11e-42WUS_ANTMA; Protein WUSCHEL
TrEMBLM0TFI39e-44M0TFI3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P07430_0011e-44(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124653136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.17e-32WOX family protein