PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco022681.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family ZF-HD
Protein Properties Length: 190aa    MW: 20696 Da    PI: 8.5929
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco022681.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer82.26.2e-261160557
  ZF-HD_dimer  5 rYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57
                 +YkeC++NhAa+lG++a DGC+E++++   e+ + +l CaACgCHRnFHR+  
  Aco022681.1 11 VYKECMRNHAAKLGTYAADGCCEYTAD---EARPGSLSCAACGCHRNFHRKVF 60
                 7*************************8...6789****************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047704.1E-221159IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.6E-201258IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257748.0E-171258IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152321.7421259IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS501578.5594474IPR007087Zinc finger, C2H2
PROSITE patternPS0002804669IPR007087Zinc finger, C2H2
Gene3DG3DSA:1.10.10.601.4E-2384160IPR009057Homeodomain-like
SuperFamilySSF466898.6E-1289159IPR009057Homeodomain-like
TIGRFAMsTIGR015656.5E-2395159IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MERERVVLGE VYKECMRNHA AKLGTYAADG CCEYTADEAR PGSLSCAACG CHRNFHRKVF  60
LDGHRRHDHQ QQPAAAQTQA AEERRRRCPE GSKPRRARTK FTEEQKARMA SFAERIGWKV  120
PRRADGGIGG EEAGDDVTRF CLEIGVSRQV FKVWMHNHRS GGGGGRGGDG AASSSMSQTV  180
ASGGDEEAS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A9e-16951621876ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020101899.11e-137zinc-finger homeodomain protein 11-like
SwissprotA2XLF45e-52ZHD11_ORYSI; Zinc-finger homeodomain protein 11
SwissprotQ10DV55e-52ZHD11_ORYSJ; Zinc-finger homeodomain protein 11
TrEMBLA0A199UR451e-133A0A199UR45_ANACO; Zinc-finger homeodomain protein 11
STRINGTraes_4AL_5659286D11.18e-51(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92043243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.16e-29homeobox protein 22