PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco022517.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family ERF
Protein Properties Length: 250aa    MW: 25951.3 Da    PI: 4.7219
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco022517.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.5e-184899155
          AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 + ykGVr++   grWv+e+r+p   +k+ r++lg+f tae+Aa+a++ a+ +l+g
  Aco022517.1 48 PVYKGVRRRGAAGRWVCEVREP---NKKSRIWLGTFPTAEMAARAHDVAAIALRG 99
                 68****************9998...347*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.3E-144899IPR001471AP2/ERF domain
PROSITE profilePS5103222.45849107IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-2049109IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.4E-3049109IPR001471AP2/ERF domain
SMARTSM003806.7E-2849113IPR001471AP2/ERF domain
CDDcd000181.03E-2650109No hitNo description
PRINTSPR003672.2E-55061IPR001471AP2/ERF domain
PRINTSPR003672.2E-57389IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MEFFSGGGGE SSSPSTSASA ETGEYATVSS APPKRPAGRT KFRETRHPVY KGVRRRGAAG  60
RWVCEVREPN KKSRIWLGTF PTAEMAARAH DVAAIALRGR SACLNFADSA TLLPIPPSYA  120
TTRDIQRAAA EAAEAFRPPE FSPNSPAAAT TPPSDADGMS EFYANNAAGG GGSGSGGNVN  180
VNVIGGGGGG GDEGFSGWMS YDDLDAGMYY ASMAEGWFVE PPTSRDGGHS NWDEGDGGCD  240
EVSLWSYSI*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY7858585e-72AY785858.1 Hordeum vulgare subsp. vulgare cultivar Optic HvCBF5 (CBF5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020112362.11e-174dehydration-responsive element-binding protein 1C-like
SwissprotA2XWL64e-56DRE1E_ORYSI; Dehydration-responsive element-binding protein 1E
SwissprotQ8H2734e-56DRE1E_ORYSJ; Dehydration-responsive element-binding protein 1E
TrEMBLA0A199UHM51e-177A0A199UHM5_ANACO; Dehydration-responsive element-binding protein 1E
STRINGXP_008804750.12e-85(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25480.16e-44dehydration response element B1A
Publications ? help Back to Top
  1. Chen JQ,Meng XP,Zhang Y,Xia M,Wang XP
    Over-expression of OsDREB genes lead to enhanced drought tolerance in rice.
    Biotechnol. Lett., 2008. 30(12): p. 2191-8
    [PMID:18779926]
  2. Li S, et al.
    Mutation of OsGIGANTEA Leads to Enhanced Tolerance to Polyethylene Glycol-Generated Osmotic Stress in Rice.
    Front Plant Sci, 2016. 7: p. 465
    [PMID:27148296]