PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco021545.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family B3
Protein Properties Length: 569aa    MW: 63949.8 Da    PI: 4.4473
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco021545.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.18.7e-15231011397
                  TT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
           B3  13 sgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                  ++++ +p kf +++ ++    +  + led++g+s evk+  +   g+  +++GW+eFv ++ +++g+f+vF++++rs f   vk++
  Aco021545.1  23 QDIMFIPPKFGRTInDL---IGEIVYLEDSEGNSSEVKI--CTINGSLAFQQGWREFVLDHSIETGEFLVFQHISRSLF--SVKIY 101
                  5789********99543...4557***************..77777899*************************99888..66665 PP
2B334.63.3e-114805611496
                  T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEE CS
           B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkv 96 
                  ++l l+ +  ++ g k  e k ++led+s r W v +  + ++    +++GW  F++an+L+egD + +  + + s++ ++v++
  Aco021545.1 480 NWLELSERLPTQWGRKRLERKVIILEDPSMRLWPVLY--QESDMFQGFSSGWGAFARANNLQEGDLCELVEVANeSGQVCHVQI 561
                  5554444444444555667789***************..999999**********************99866664666666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-187104IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.26E-208106IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.01111104IPR003340B3 DNA binding domain
CDDcd100175.62E-1612102No hitNo description
SMARTSM010192.1E-1114104IPR003340B3 DNA binding domain
PfamPF023622.8E-1224101IPR003340B3 DNA binding domain
PROSITE profilePS508639.643467565IPR003340B3 DNA binding domain
SMARTSM010191.6E-5472565IPR003340B3 DNA binding domain
PfamPF023623.8E-9478559IPR003340B3 DNA binding domain
SuperFamilySSF1019362.16E-11480557IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.2E-10480561IPR015300DNA-binding pseudobarrel domain
CDDcd100173.63E-11487544No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 569 aa     Download sequence    Send to blast
MMMMGSCSST PHSFFRVMLG NFQDIMFIPP KFGRTINDLI GEIVYLEDSE GNSSEVKICT  60
INGSLAFQQG WREFVLDHSI ETGEFLVFQH ISRSLFSVKI YSISACERVH FHGKDESDNA  120
IKKRKMIGSL ENKLHLPKQI GNSEDMEGGC FLAAENPGIK EVEVKFVPSE STNGEIVVTN  180
SVKFMEIETA RQISPPSCPE AREVDEDSEC KRELYLFESL TLKNERSTDD KEKISADGNN  240
CGRSKTAAEA ECSKLGSNFT IPGHFQEPKR EDENLTQQES RHEKLIDDHN DQEMVDSKRQ  300
CLTDIPDEKH SMILPEEKVK KSDATEEWVC HNVDEDLADE LEDVKAINVD MFLDEKDDDI  360
CCNRSTAMPE EKTLHCEKFG QDPCTKSITT KPEVPSKKED PIPVVSAGNL QQGTSGVDVK  420
QEDACEPANI PNVFPKEEMS ICLATDENCG PVKTEDLDFD ESPLPKSIKF SFSLSSTAQN  480
WLELSERLPT QWGRKRLERK VIILEDPSMR LWPVLYQESD MFQGFSSGWG AFARANNLQE  540
GDLCELVEVA NESGQVCHVQ ISKVLRLA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020111365.10.0B3 domain-containing protein Os02g0598200-like isoform X1
TrEMBLA0A199VFH10.0A0A199VFH1_ANACO; B3 domain-containing protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114613240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.13e-15B3 family protein