PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco020380.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family bHLH
Protein Properties Length: 264aa    MW: 27859.1 Da    PI: 8.2322
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco020380.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.61.6e-11145192455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h+ +Er RR++i +++ +L++l+P +    +k   Ka++L + ++YI+ Lq
  Aco020380.1 145 SHSLAERARREKISERMKTLQDLVPGC----NKVIGKASVLDEIINYIQALQ 192
                  8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.62E-11139196No hitNo description
SuperFamilySSF474596.02E-18139209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.475141191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-18141209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.5E-9145192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-11147197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MWQPLPMIGV PVAGPGAERG AGTLFAAAAG GVRNRDHSVD ESSVTESSGG SRGAARRRRR  60
DSAAAEGESP KLASATSGGG NGLTNSEGKR LKGVNSVDNN VNVKGAAEAS SGMANKQMDQ  120
IAPPPEPPKQ DYIHVRARRG QATDSHSLAE RARREKISER MKTLQDLVPG CNKVIGKASV  180
LDEIINYIQA LQCQVEFLSM KLEAVNSSMD TGIEAFPPKD FGPQTFNASS SLPFSLETPR  240
EYGQGSATEW LHMQVGGALD RVT*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269|PubMed:23715469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6669750.0KM666975.1 Ananas bracteatus clone 52395b microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020091345.10.0transcription factor bHLH79-like
SwissprotQ69WS32e-86BH094_ORYSJ; Transcription factor BHLH094
TrEMBLA0A199UFX70.0A0A199UFX7_ANACO; Transcription factor BPE
STRINGXP_008808720.11e-105(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30653577
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.17e-69BIG PETAL P