PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco019862.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

GRAS

Protein Properties

Length: 282aa MW: 30536.6 Da PI: 6.1658

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco019862.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	216.8	1.1e-66	2	197	120	312
GRAS 120 sqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL...rvkp.........gEalaVn 205 +qG+QWpaL+qaLa Rp+gpps+R+Tg+g+p+++s+++l+++g++La+fAe+++v+f+++ lva +l+dle+ +L + + Ea+aVn Aco019862.1 2 KQGTQWPALIQALALRPGGPPSFRLTGIGPPQPDSTDALQQVGWKLAQFAEAIRVDFRYRGLVAASLADLEPYMLldpD--EgegegpgaeAEAVAVN 97 89**********************************************************************95441..25566777789** PP GRAS 206 lvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacega 303 +v++lhrll+++++le+ vL +v+ ++Pk+v+vveqea+hn++sFlerf+eal+yys+lfdsle + s +++++++ +lgr+i nvv ce a Aco019862.1 98 SVFELHRLLARPGALEK----VLGTVRAVRPKIVTVVEQEANHNAGSFLERFTEALHYYSTLFDSLEGG---GSGAEQVMSELYLGRQIWNVVGCEAA 188 *************....*****************************************999...8********************* PP GRAS 304 errerhetl 312 er+erhet Aco019862.1 189 ERTERHETT 197 *****86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	34.237	1	239	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.9E-64	2	197	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MKQGTQWPAL IQALALRPGG PPSFRLTGIG PPQPDSTDAL QQVGWKLAQF AEAIRVDFRY 60 RGLVAASLAD LEPYMLLDPD EGEGEGPGAE AEAVAVNSVF ELHRLLARPG ALEKVLGTVR 120 AVRPKIVTVV EQEANHNAGS FLERFTEALH YYSTLFDSLE GGGSGAEQVM SELYLGRQIW 180 NVVGCEAAER TERHETTPPS DRRSLAAAAA LQQNTPRTTH HAPPPLSSPT PKKISNQSIN 240 HARVSRSDCF SSTILIWLWL PLYLPFLLVR VLGSGTAEQG V*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	1e-25	1	191	137	312	Protein SCARECROW
5b3h_A	1e-25	1	191	136	311	Protein SCARECROW
5b3h_D	1e-25	1	191	136	311	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM664334	5e-57	KM664334.1 Ananas bracteatus clone 49134c microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020104070.1	1e-179	DELLA protein SLN1-like, partial
Swissprot	Q9ST48	1e-105	DWRF8_MAIZE; DELLA protein DWARF8
TrEMBL	A0A199UDW0	1e-137	A0A199UDW0_ANACO; DELLA protein DWARF8 (Fragment)
STRING	Pavir.Ib04357.1.p	1e-104	(Panicum virgatum)
STRING	MLOC_67940.1	1e-104	(Hordeum vulgare)
STRING	Si039400m	1e-104	(Setaria italica)
STRING	Traes_4BS_2EE4988CD.1	1e-105	(Triticum aestivum)
STRING	TRIUR3_18790-P1	1e-105	(Triticum urartu)
STRING	GRMZM2G144744_P01	1e-103	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP998	38	138

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14920.1	4e-77	GRAS family protein

Link Out ? help Back to Top
Phytozome	Aco019862.1

Publications ? help Back to Top
Tenaillon MI, et al. Patterns of DNA sequence polymorphism along chromosome 1 of maize (Zea mays ssp. mays L.). Proc. Natl. Acad. Sci. U.S.A., 2001. 98(16): p. 9161-6 [PMID:11470895]