PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco019526.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MYB
Protein Properties Length: 227aa    MW: 25393.7 Da    PI: 6.144
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco019526.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.81.2e-132068148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT++Ed +l++ ++  G + +W+++++  g+ R++k+c++rw +yl
      Aco019526.1 20 RGPWTAQEDNRLAKFIAADGRRcCWRAVPKLAGLQRCGKSCRLRWTNYL 68
                     89******************99*************************97 PP
2Myb_DNA-binding42.61.4e-1378117546
                      -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      T+ E+ l ++++++lG++ W++Ia+++  gRt++q+k++w++
      Aco019526.1  78 TEAEEWLVIHLHAKLGNR-WSKIAAELS-GRTDNQIKNYWNT 117
                      889999************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.2E-181170IPR009057Homeodomain-like
PROSITE profilePS5129413.3011568IPR017930Myb domain
SuperFamilySSF466894.12E-2417115IPR009057Homeodomain-like
SMARTSM007179.2E-81970IPR001005SANT/Myb domain
PfamPF002491.9E-122068IPR001005SANT/Myb domain
CDDcd001671.18E-52268No hitNo description
PROSITE profilePS5129422.15369123IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-2171123IPR009057Homeodomain-like
SMARTSM007171.3E-973121IPR001005SANT/Myb domain
CDDcd001671.85E-978117No hitNo description
PfamPF002493.7E-1278117IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
GGEGLIMGRR PCCDKQRVKR GPWTAQEDNR LAKFIAADGR RCCWRAVPKL AGLQRCGKSC  60
RLRWTNYLRP GLNHSMLTEA EEWLVIHLHA KLGNRWSKIA AELSGRTDNQ IKNYWNTRIK  120
KKLVGMGIDP ATHEPLGPTE SMAPESKSDD KPQLQEGEAQ ITKAAASEEE EQPVLSSSFL  180
WDGDFSAERE ESAMFPCGSF EGCVEVGDEF WNFRCDSLFE CAELGV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-22201234105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtR2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development. {ECO:0000269|PubMed:15805488}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Increases before the onset of volatile emission at the end of the light period, peaks at night and decreases when volatile emission declines early morning.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020092730.11e-164protein ODORANT1-like
SwissprotQ50EX65e-68ODO1_PETHY; Protein ODORANT1
TrEMBLA0A199VMI91e-153A0A199VMI9_ANACO; Protein ODORANT1
STRINGXP_008810422.12e-73(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12350.16e-67myb domain protein 42
Publications ? help Back to Top
  1. Verdonk JC,Haring MA,van Tunen AJ,Schuurink RC
    ODORANT1 regulates fragrance biosynthesis in petunia flowers.
    Plant Cell, 2005. 17(5): p. 1612-24
    [PMID:15805488]