PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco019039.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 210aa MW: 23137.6 Da PI: 10.3109 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 58.3 | 9.9e-19 | 88 | 124 | 2 | 38 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevavi 38 rie+k rqv fskRr+g++KKA EL vLCdaev ++ Aco019039.1 88 RIEDKASRQVCFSKRRAGLMKKARELAVLCDAEVGLV 124 8*********************************987 PP | |||||||
2 | K-box | 35.9 | 3.2e-13 | 137 | 203 | 29 | 95 |
K-box 29 enLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 e L+ +qR l ++ +Ls+ eL+q+e++L+ +l++ ++K+++++++i elq+k ++l e+ + L+ Aco019039.1 137 ELLEFSQRSLDKSNIAQLSFDELNQVESELDGALTQTIARKTQVMMDMIAELQEKGEKLLEKRRVLQ 203 6788889999999**********************************************99998886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 23.366 | 79 | 124 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.16E-19 | 79 | 127 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.8E-20 | 79 | 132 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.2E-15 | 81 | 101 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.7E-19 | 88 | 124 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.2E-15 | 101 | 116 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.2E-15 | 116 | 137 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 7.748 | 122 | 209 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 1.1E-9 | 137 | 203 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MRSMATRTSS RPLPHHPFSP FAIPERERER GHRSIDRSID TSIDVALQIP SSPASASSSS 60 SFVGAGIRVL WGSGKGAAMV RGRVELRRIE DKASRQVCFS KRRAGLMKKA RELAVLCDAE 120 VGLVGTKGFA CPRTKDELLE FSQRSLDKSN IAQLSFDELN QVESELDGAL TQTIARKTQV 180 MMDMIAELQE KGEKLLEKRR VLQSVSCFS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Regulates floral organ identity and floral meristem determinacy. May be involved in the control of flowering time. {ECO:0000269|PubMed:19820190, ECO:0000269|Ref.8}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020111038.1 | 5e-84 | MADS-box transcription factor 58-like | ||||
Swissprot | Q6EU39 | 6e-24 | MADS6_ORYSJ; MADS-box transcription factor 6 | ||||
TrEMBL | A0A199VFB2 | 6e-74 | A0A199VFB2_ANACO; Transcription factor CAULIFLOWER | ||||
STRING | XP_008810235.1 | 1e-50 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP28873 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45650.1 | 7e-21 | AGAMOUS-like 6 |
Link Out ? help Back to Top | |
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Phytozome | Aco019039.1 |