PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco018208.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family bHLH
Protein Properties Length: 410aa    MW: 44023.3 Da    PI: 7.4067
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco018208.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.93.7e-13266311454
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  +h e+Er+RR+++N++f  Lr+++P+       +++Ka+ L  Av YIk+L
  Aco018208.1 266 NHVEAERQRREKLNHRFYALRSVVPNV-----SRMDKASLLADAVAYIKEL 311
                  799***********************6.....4****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.4E-2449172IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474591.1E-17254323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.168262311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.24E-15265315No hitNo description
PfamPF000101.3E-10266311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-17266326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-16268317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MEELISTPSS CSPPASQQHF LGAGPGGRTP SSGAAPSEHH HHHAHPPHLV LLSFGDGHFR  60
GTRDGEHQRR RGVDQEGEGE GAGAGGDGDE AEWFYVVSLT RSFGVGDAAA PARAYVASAP  120
LWLTGAHAMA ASGCERAREA HLHGIETLVC VPVPGGVLEL GSADLIPENW VLGERRRGAK  180
KRGRRPGTGR ETPVNHNWVL VQQANSILSS DAPHHHLAAA DPSLRAASLD SEHSDSDAAG  240
LLQGERRRGA KKRGRRPGTG RETPVNHVEA ERQRREKLNH RFYALRSVVP NVSRMDKASL  300
LADAVAYIKE LRAKVDDLEA DAKRARNDRI LEVKVVGSDA LIRAQSENAG HPTAVLMAAL  360
RDLELDVRHA CVANVKEVVL QDVIVTVPYA LQTEDSLRTA LLNSLEKSC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A6e-25260335276Transcription factor MYC2
5gnj_B6e-25260335276Transcription factor MYC2
5gnj_E6e-25260335276Transcription factor MYC2
5gnj_F6e-25260335276Transcription factor MYC2
5gnj_G6e-25260335276Transcription factor MYC2
5gnj_I6e-25260335276Transcription factor MYC2
5gnj_M6e-25260335276Transcription factor MYC2
5gnj_N6e-25260335276Transcription factor MYC2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008780029.31e-119transcription factor MYC2-like
TrEMBLA0A199W8W10.0A0A199W8W1_ANACO; Transcription factor bHLH14
STRINGGSMUA_Achr1P18910_0011e-125(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.15e-39bHLH family protein