PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco018180.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family Trihelix
Protein Properties Length: 461aa    MW: 50384.3 Da    PI: 9.5758
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco018180.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix35.33e-1131116170
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm................rergferspkqCkekwenlnkrykkikegekk 70 
                  +W++  v+ L+ea+++ ++  +r+kl++ +W+ +++++                  +   +s+ qCk+k e+++kr++ +  ++ +
  Aco018180.1  31 EWSEGAVRRLLEAYESAWSLRGRAKLRGSDWAGIARHVslgsrptspettttttTTTTRAKSARQCKNKVESMKKRFRSESSTRPE 116
                  5***************************************************876666678*****************99877655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.4E-1129144No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MDASAAAAEA EAPPPPSSPV QQQQLRGRRD EWSEGAVRRL LEAYESAWSL RGRAKLRGSD  60
WAGIARHVSL GSRPTSPETT TTTTTTTTRA KSARQCKNKV ESMKKRFRSE SSTRPEPSTR  120
PGSSSPRRRR GSSCTWRFYG AMERLLSGAK SETHSADFAP YTCRNEIGPS ANNNNNNNND  180
EVLVGGERGD DANSSSSKGK LCESFPECRT CDDGNEEEGE EGTMPNTTGI DPSNKTKKRK  240
GPRNEVAESI RALARSILKV EKARIEMCKN SEKMKAEAEV RRGETELKMT EIVAETQLRI  300
AKLLAKRLNA RCGKSGSSTN DKGSVAVHSS PLNQMGRLKL VIDQNKCWLF ESICSNSNIC  360
VQLMETIGLN TKLNLTRQFG SNLSYLVLTY SPSEALREGG EAVEKVGLKT VSSGDDVGEI  420
GAESGIRGQS AVGEIGVEKR GEVRTVEERR ETRRKTKTNE *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020099540.10.0putative uncharacterized protein DDB_G0291608
TrEMBLA0A199V5250.0A0A199V525_ANACO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP73333346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54390.11e-37sequence-specific DNA binding transcription factors