PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco017499.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 202aa MW: 23368.7 Da PI: 9.1528 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 91.3 | 4.6e-29 | 42 | 91 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rien+ rqvtfskRrng+lKKA+ELSvLCdaeva++ifs+ gklye++s Aco017499.1 42 RIENTASRQVTFSKRRNGLLKKAFELSVLCDAEVALVIFSTAGKLYEFAS 91 8***********************************************86 PP | |||||||
2 | K-box | 57.6 | 5.6e-20 | 114 | 202 | 9 | 97 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 ++++ + + e+a L k+ie ++e+R+l G ++es+sl+eL+ Le +Le+sl+kiRskK++ +l++i+el++ke l +en Lr+k Aco017499.1 114 AAQQSLVQRRSEAATLAKKIELHETEKRKLCGGGVESCSLEELHDLEAELERSLSKIRSKKQRKILQEISELKEKESLLLKENALLREK 202 34444555678***************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.6E-31 | 33 | 92 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 28.959 | 33 | 93 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-27 | 35 | 55 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 35 | 89 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.57E-30 | 35 | 112 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.36E-35 | 42 | 108 | No hit | No description |
Pfam | PF00319 | 3.6E-26 | 42 | 89 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-27 | 55 | 70 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-27 | 70 | 91 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 12.454 | 119 | 202 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 2.2E-20 | 121 | 202 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MPFLVSPLPY KEREHLVERE REHLVERERE RERERGKGGF DRIENTASRQ VTFSKRRNGL 60 LKKAFELSVL CDAEVALVIF STAGKLYEFA SSNMQKTIDR YTSHTKEDIG SKEAAQQSLV 120 QRRSEAATLA KKIELHETEK RKLCGGGVES CSLEELHDLE AELERSLSKI RSKKQRKILQ 180 EISELKEKES LLLKENALLR EK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3mu6_A | 4e-20 | 35 | 104 | 2 | 71 | Myocyte-specific enhancer factor 2A |
3mu6_B | 4e-20 | 35 | 104 | 2 | 71 | Myocyte-specific enhancer factor 2A |
3mu6_C | 4e-20 | 35 | 104 | 2 | 71 | Myocyte-specific enhancer factor 2A |
3mu6_D | 4e-20 | 35 | 104 | 2 | 71 | Myocyte-specific enhancer factor 2A |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor active in flowering time control. May control internode elongation and promote floral transition phase. May act upstream of the floral regulators MADS1, MADS14, MADS15 and MADS18 in the floral induction pathway. {ECO:0000269|PubMed:15144377, ECO:0000269|PubMed:17166135}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020113238.1 | 1e-110 | MADS-box transcription factor 50-like, partial | ||||
Swissprot | Q9XJ60 | 2e-60 | MAD50_ORYSJ; MADS-box transcription factor 50 | ||||
TrEMBL | A0A2H3XGK8 | 8e-61 | A0A2H3XGK8_PHODC; MADS-box transcription factor 50-like | ||||
STRING | XP_008783455.1 | 1e-61 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1413 | 33 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45660.1 | 4e-49 | AGAMOUS-like 20 |
Link Out ? help Back to Top | |
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Phytozome | Aco017499.1 |