PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco017396.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family bHLH
Protein Properties Length: 317aa    MW: 33363.6 Da    PI: 6.5136
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco017396.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.51.2e-08163207554
                  HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  h+++Er RR+ri +++  L+el+P+       K + a++L +  +Y+k L
  Aco017396.1 163 HSIAERLRRERISERMRALQELVPNT-----NKTDRAAMLDEILDYVKFL 207
                  99***********************7.....5***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.31E-11156212No hitNo description
SuperFamilySSF474592.49E-15156217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.986158207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-14160218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.5E-6163207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-10164213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0031347Biological Processregulation of defense response
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MANHPPPPNG MGDDFFDQIF AMPPYGGGDD AAAALGGGGG GDGHHLAAGM VLHPRPGSAG  60
DGGGGAAPPF PLALSLEQGK AGEGSGSGNP LREDADAKER DPVHLAGLFP PGFGHMQTHQ  120
IRPNPPPQMF HGQAKPGGVV AAPQAPAPRP KVRARRGQAT DPHSIAERLR RERISERMRA  180
LQELVPNTNK TDRAAMLDEI LDYVKFLRLQ VKVLSMSRLG GAGAVAQLVA DIPLSVEGEA  240
SESGSKQHIW EKWSTDGTER QVAKLMEEDI GAAMQFLQSK ALCIMPISLA VAIYDTQQQH  300
QPESGHSVKP EPNTPS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1167172RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6662861e-149KM666286.1 Ananas bracteatus clone 51572c microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020095552.10.0transcription factor UNE12 isoform X2
SwissprotO227682e-76UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A199VZR30.0A0A199VZR3_ANACO; Transcription factor UNE12
STRINGGSMUA_Achr9P25560_0011e-141(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26563580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.32e-53bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]