PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco017355.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family bHLH
Protein Properties Length: 448aa    MW: 48326.2 Da    PI: 6.5677
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco017355.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.42.9e-09252299455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Aco017355.1 252 SHSLAERVRREKISQRMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 299
                  8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.66E-10246303No hitNo description
SuperFamilySSF474591.7E-16246315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-16248315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.396248298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-6252299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.1E-10254304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MNCGPPPPPP PPPPPPGDLC FFNLNWDQSI DPNGEISSQP HYVAAAPLNS PPKLDLSMIS  60
HLHHTQQAQG SLPISEGLMP ITHLDQFPTD SGFVERAARF SCFDGGGGGY AGFGRSLTAN  120
NVELGNAREE SSVSDPASAS GEVSLKGPPF ESNARKRKAA PKGKGKETCS TISSNDPPKN  180
SEAKDPNAKK CKLGESEGTK DDSIKPKVER NNASTTDNGN GVQKQGKNNT KPPEPPKDYI  240
HVRARRGQAT DSHSLAERVR REKISQRMKL LQDLVPGCNK VTGKALMLDE IINYVQSLQR  300
QVEFLSMKLA TVNPNLDFNN LPNLLAKDMH QTCGGPLVNS IFPLETSGVA LSYASQPQHG  360
NLLNCSIANV LENHCSINPL DSALCRTMNT HHPYFNGIGD AASQMGTFWE DDLQSVVQMD  420
IGQTQEMVVS SQSFNGPSES VHMKMEL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00036PBMTransfer from AT5G48560Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6623191e-169KM662319.1 Ananas bracteatus clone 45953 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020103474.10.0transcription factor bHLH78-like
TrEMBLA0A199W5B10.0A0A199W5B1_ANACO; Transcription factor bHLH78
STRINGXP_008799570.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91938137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.14e-59bHLH family protein