PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco017328.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family B3
Protein Properties Length: 777aa    MW: 84482.3 Da    PI: 6.7594
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco017328.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.33.3e-19611707295
                  EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..E CS
           B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelv 93 
                  +kvl++sdv+++gr+vlpkk ae h  +++ + ++ + +ed  ++r+W++++++  ++ks++y+l+ ++ +Fv++ngL+egDf+v++  ++ ++++++
  Aco017328.1 611 QKVLKQSDVGSLGRIVLPKKEAEIHlpELDARDGISIPMEDiGTSRVWNMRYRFwpNNKSRMYLLE-NTGDFVRSNGLQEGDFIVIY--SDvKSGKYM 705
                  79********************999**99999*********7778*******99777777777777.********************..555888888 PP

                  EE CS
           B3  94 vk 95 
                  ++
  Aco017328.1 706 IR 707
                  76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.7E-27605713IPR015300DNA-binding pseudobarrel domain
CDDcd100152.19E-33608709No hitNo description
SuperFamilySSF1019361.12E-22609706IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.2E-19610712IPR003340B3 DNA binding domain
PROSITE profilePS5086310.771610712IPR003340B3 DNA binding domain
PfamPF023621.7E-15611707IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009657Biological Processplastid organization
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0001076Molecular Functiontranscription factor activity, RNA polymerase II transcription factor binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 777 aa     Download sequence    Send to blast
MEKEEGKRQV QDVEEDNRRR NSTDQEMEDI MSDMEGEDSF LFSDDPFPSL PDFPCLSSPP  60
ATPPPSKNSP YPSSSNSSSS SSSSWSFFCV PTAGSDVLAQ TPTQPPSDPN LAAVGEGAEG  120
LDFLGEGDFF DLSDPWDPLS LFPGENLMID DGGGSVDPLP TPIELDLPGE EKHDDCDDEN  180
EKCGARAEGG ECEDLAKVFL EWLKSNKDTI SPEDLRSIRL KRSTIECAAR RLGGGKHGRM  240
QLLKLILAWV QNHHLHKKRR RHHHHHHHRT SSAEASHVAG FSYFNQNAPF LLPENSIGHN  300
PNLDYSGSGG GGGGGFDNWI HCPVDPTKAV PPSPYGAMAC NESLYPSAAA APYGGYHHSC  360
TTSSVVVNSQ PFSPAADFHA VDPAAMAWPA HHFGPAPGPH FPQFQGAAAS SHSPAAVAAL  420
PFPAAAFPNQ FAGNPLYHQG QRLVGLASAT KEARKKRMAR QRRLSSLHHH RSAHQNGPNH  480
AAAAELGLGP SSESNAGSSM HLDCRNWAFW SSISSHTQQV KAVADVLSPP PPLPLLPLSS  540
NPSHMKPPQA SQQTSMPQQQ QQQQQNSQRG AATAAERRQV HAVAVFLVPA SIANYFFRGM  600
KVEKNLRFLL QKVLKQSDVG SLGRIVLPKK EAEIHLPELD ARDGISIPME DIGTSRVWNM  660
RYRFWPNNKS RMYLLENTGD FVRSNGLQEG DFIVIYSDVK SGKYMIRGVK VRQPLEPRVM  720
SGKNGGKAHQ KLGTSQKCTS VINNDGDDDN KTTNNIGGMG NKGDPLAITE VRMPLI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A1e-386067201115B3 domain-containing transcription factor FUS3
6j9b_D1e-386067201115B3 domain-containing transcription factor FUS3
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00083PBMTransfer from AT3G24650Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020111436.10.0LOW QUALITY PROTEIN: regulatory protein viviparous-1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75293443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.11e-64B3 family protein