PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco017187.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | GeBP | ||||||||
Protein Properties | Length: 384aa MW: 41357.7 Da PI: 4.6899 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 96.7 | 2.3e-30 | 105 | 204 | 2 | 97 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifelskki 95 lfqrlw+ee e+v+L+G+ +f++++g+ +++ d+ fy+ +++++ +++sksqlveK+rrLKkK+ ++v++ ++ ++++f+++h+q fe+++ i Aco017187.1 105 LFQRLWTEEEELVILRGFSEFTTRRGTafASHQyDTGPFYDEMRRQLPLDFSKSQLVEKLRRLKKKYLNCVARlRSAADSFAFRSPHEQALFEIARNI 202 79************************99877778***************************************77788899***************** PP DUF573 96 Wg 97 W Aco017187.1 203 WT 204 *7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 5.8E-27 | 106 | 203 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 384 aa Download sequence Send to blast |
MASAEEEEKE RAVFDDDDGD DSEEEEEEED DDDDTDDDLP AAAAAAAPPP PASPMEAERH 60 TDSTADADDG APTTSGAKPN RNRNPNPNRG AHGGGAAAAE EARRLFQRLW TEEEELVILR 120 GFSEFTTRRG TAFASHQYDT GPFYDEMRRQ LPLDFSKSQL VEKLRRLKKK YLNCVARLRS 180 AADSFAFRSP HEQALFEIAR NIWTPSSDPN PDPANPIINN SDSDRKPPRS RSRRQQQRQQ 240 RRLRRATAAA AAAAAAAEDP IPVPVPVPVP VAVPVPVPVP ITVTAENPTP KPPPPPPPLA 300 TPAAASDLSP LLFKELVGAA IGGPLLGFGG GGGGGGSSVS NLGDGRWRKQ QILELEVYLK 360 RLELLREHIE STLRELKGSS GGS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020108055.1 | 0.0 | probable transcription factor At3g04930 | ||||
Refseq | XP_020108057.1 | 0.0 | probable transcription factor At3g04930 | ||||
Refseq | XP_020108058.1 | 0.0 | probable transcription factor At3g04930 | ||||
Refseq | XP_020108059.1 | 0.0 | probable transcription factor At3g04930 | ||||
Refseq | XP_020108060.1 | 0.0 | probable transcription factor At3g04930 | ||||
Refseq | XP_020108061.1 | 0.0 | probable transcription factor At3g04930 | ||||
TrEMBL | A0A199W017 | 0.0 | A0A199W017_ANACO; Mediator-associated protein 1 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP974 | 37 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04930.2 | 6e-31 | DNA-binding storekeeper protein-related transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | Aco017187.1 |