PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco017082.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family G2-like
Protein Properties Length: 331aa    MW: 36181.9 Da    PI: 8.9308
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco017082.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like106.41.6e-33121175155
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  ++rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl
  Aco017082.1 121 RQRLRWTNELHERFVDAVAQLGGPDRATPKGVLRIMGVPGLTIYHVKSHLQKYRL 175
                  58****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.175118178IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.5E-32120176IPR009057Homeodomain-like
SuperFamilySSF466893.94E-18120175IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-25122176IPR006447Myb domain, plants
PfamPF002492.0E-9123174IPR001005SANT/Myb domain
PfamPF143791.7E-10207243IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MTSRDPCRHV AIFNSRLTQI RSSHSEATWI GSNLLILASI LGSKHLLFGV RRSKFVLWIL  60
SVLFWGDFAL FFDLEMYQPK PIAGMGPTHG NSIALNKQAE LARNGVGSPN DASNSASAAS  120
RQRLRWTNEL HERFVDAVAQ LGGPDRATPK GVLRIMGVPG LTIYHVKSHL QKYRLAKYIP  180
EPSSDGSKPE KKDPGDLLSG IESSSGMQIT EALKLQMEVQ RQLQLRIEAQ GKYLKKIIEE  240
QQRLSGVLAT SEADNPSDPD KTEPSTPAPT SETPTAGTAP SGHFFSAAHE PPLTPDYPSK  300
DNSNDERASK RPRTGETADL VLAHQILESN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A5e-23121178259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B5e-23121178259Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A4e-23121178158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-23121178158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-23121178158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-23121178158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A5e-23121178259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C5e-23121178259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D5e-23121178259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F5e-23121178259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H5e-23121178259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J5e-23121178259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020103000.11e-177myb family transcription factor PHL7-like
SwissprotQ9SJW02e-85PHL7_ARATH; Myb family transcription factor PHL7
TrEMBLA0A199V9591e-175A0A199V959_ANACO; Protein PHR1-LIKE 1
STRINGXP_008782978.13e-96(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22203896
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.11e-77G2-like family protein