PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco016643.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 209aa MW: 24006.7 Da PI: 9.4595 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 95.3 | 2.7e-30 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien + rqvtfskRrng+lKKA+ELSvLCdaevavi+fs++gklye+ Aco016643.1 9 KRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIVFSPKGKLYEFG 58 79**********************************************95 PP | |||||||
2 | K-box | 67.7 | 4e-23 | 79 | 169 | 7 | 97 |
K-box 7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 k + e++ ++l+ +++ + k++e+L+ ++++llGe+L+s+ ++eL++Le+ +eksl +iR +K ++l eqi +l++kek+lq++n+aLr++ Aco016643.1 79 KGAVEQNIQQLKFQITIMSKKLESLEASKKKLLGENLDSCCVEELHELESTIEKSLHRIRGRKIKFLEEQIAQLKEKEKMLQKKNEALREQ 169 3478999**********************************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 31.286 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.0E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.2E-30 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 5.61E-44 | 3 | 76 | No hit | No description |
SuperFamily | SSF55455 | 2.75E-34 | 3 | 88 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.1E-27 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.2E-30 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.2E-30 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 8.6E-23 | 83 | 169 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 13.19 | 86 | 178 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000060 | Biological Process | protein import into nucleus, translocation | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009911 | Biological Process | positive regulation of flower development | ||||
GO:0010077 | Biological Process | maintenance of inflorescence meristem identity | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008134 | Molecular Function | transcription factor binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MVRGKTEMKR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVAVIVFSP KGKLYEFGSA 60 SMQKTIDRYR TYSKNDCDKG AVEQNIQQLK FQITIMSKKL ESLEASKKKL LGENLDSCCV 120 EELHELESTI EKSLHRIRGR KIKFLEEQIA QLKEKEKMLQ KKNEALREQN QVPLATLRDV 180 APHRDAANHP MDVETELCIG WPRTREEP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 6e-19 | 1 | 73 | 1 | 73 | MEF2 CHIMERA |
6byy_B | 6e-19 | 1 | 73 | 1 | 73 | MEF2 CHIMERA |
6byy_C | 6e-19 | 1 | 73 | 1 | 73 | MEF2 CHIMERA |
6byy_D | 6e-19 | 1 | 73 | 1 | 73 | MEF2 CHIMERA |
6bz1_A | 6e-19 | 1 | 73 | 1 | 73 | MEF2 CHIMERA |
6bz1_B | 6e-19 | 1 | 73 | 1 | 73 | MEF2 CHIMERA |
6bz1_C | 6e-19 | 1 | 73 | 1 | 73 | MEF2 CHIMERA |
6bz1_D | 6e-19 | 1 | 73 | 1 | 73 | MEF2 CHIMERA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor active in flowering time control. May control internode elongation and promote floral transition phase. May act upstream of the floral regulators MADS1, MADS14, MADS15 and MADS18 in the floral induction pathway. {ECO:0000269|PubMed:15144377, ECO:0000269|PubMed:17166135}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00076 | ChIP-chip | Transfer from AT2G45660 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020093968.1 | 1e-153 | MADS-box transcription factor 50-like isoform X4 | ||||
Swissprot | Q9XJ60 | 1e-85 | MAD50_ORYSJ; MADS-box transcription factor 50 | ||||
TrEMBL | A0A199UIK1 | 1e-151 | A0A199UIK1_ANACO; MADS-box transcription factor 50 | ||||
STRING | OGLUM03G01750.2 | 1e-84 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1413 | 33 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45660.1 | 6e-54 | AGAMOUS-like 20 |
Link Out ? help Back to Top | |
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Phytozome | Aco016643.1 |