PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco016434.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family bHLH
Protein Properties Length: 312aa    MW: 34167.8 Da    PI: 5.2193
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco016434.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.14.2e-10223266755
                  HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  ++ ++RR+ri +++  L++l+P+      +K++ +++LekA+ Y+k Lq
  Aco016434.1 223 IAAKNRRERISERLKILQDLVPNG-----TKVDLVTMLEKAISYVKFLQ 266
                  5679******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.37216265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-12216273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.14E-13216276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.15E-12218270No hitNo description
SMARTSM003535.2E-12222271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-7224266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048766Biological Processroot hair initiation
GO:0005739Cellular Componentmitochondrion
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MALTRERTIK ELQYDSIYAP SLDLFGFKSH YSSFLEEGEV SESLSSYSAG LPPILSDPSN  60
SPAPSFVFGM GNSPLQEAHL STSFKVGSAS DHWGYCSSSS VLSFEQGGRL PHDSYLNLDQ  120
EEECALWIDA ADQNYSINQS HDQSFDISGV NDSQQQGEER FGLLYSSSSS ADGVQESANV  180
HNKVPQKRSY VGGDVQVSTS KKQCGANKKS KAKPSPSKDP QSIAAKNRRE RISERLKILQ  240
DLVPNGTKVD LVTMLEKAIS YVKFLQLQVK VLATDEFWPT QGGKAPDLSQ VKDAIDAILS  300
SQRDRDSNPR Q*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020097898.10.0transcription factor bHLH83-like isoform X1
TrEMBLA0A199UF171e-177A0A199UF17_ANACO; Transcription factor bHLH83
STRINGXP_008782563.14e-99(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141238117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66470.11e-51ROOT HAIR DEFECTIVE6