PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco016415.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

bHLH

Protein Properties

Length: 217aa MW: 24036.2 Da PI: 10.4347

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco016415.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	25.4	2.5e-08	28	78	5	54
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 + +E++RR ++++ +L +l+Pk + +++ l+ + L A YIk+L Aco016415.1 28 RKTIEKNRRMHMKNLSMNLLSLIPKdHFTTSKDALTQLDHLDVAASYIKKL 78 678********************777777777*************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.53E-8	21	90	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.2E-9	25	90	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.1E-5	28	78	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
MKRSCGSRGS NTTTTNNSSI NNCDKVERKT IEKNRRMHMK NLSMNLLSLI PKDHFTTSKD 60 ALTQLDHLDV AASYIKKLRG RIEKLKQRRE SGPSIEGVRE DASEGTMTTA TTAAATIGVR 120 LPVVEVRYQD RHLEVVLIIS SNSSSSSSSS SSNSQKRRFR FHEVISLLEE EGAEVVNANF 180 SVVGDKVFHT IHSQAVCSRI GLEASRVSER LKKLVF*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020097054.1	1e-157	uncharacterized protein LOC109716143
TrEMBL	A0A199W1V5	1e-152	A0A199W1V5_ANACO; Uncharacterized protein
STRING	XP_008787951.1	2e-76	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP829	36	133

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20970.1	1e-23	bHLH family protein

Link Out ? help Back to Top
Phytozome	Aco016415.1