PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco016102.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | ERF | ||||||||
Protein Properties | Length: 233aa MW: 26681.9 Da PI: 9.2486 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 36.8 | 9.6e-12 | 109 | 150 | 3 | 51 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 +GV++ k+ +W A I++ +k+++lg+ g+ eeAa+++++a+ Aco016102.1 109 MRGVYF--KNMKWQAAIKVD-----KKQIHLGTVGSQEEAARLYDRAAF 150 79**98..47*********4.....5********************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 8.873 | 84 | 163 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.99E-8 | 108 | 153 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.0E-4 | 108 | 165 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.0E-6 | 108 | 151 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.6E-6 | 111 | 155 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MVSLRRRRLL GYSFVKNLFA VDLPKHNEDE KMVENSTLHV KSSSVHPLPP IKLDTQMPES 60 NSESVPESSN AATSDSPKEE LNHYYPGKEI KRRKRHRRKH YDDHEPCIMR GVYFKNMKWQ 120 AAIKVDKKQI HLGTVGSQEE AARLYDRAAF MCGREPNFEL SEEEKEELRS YKWEDFLAMT 180 RSAINNKKHQ RKPGVGGRRK KSENQLQSEG ETEKEMANSS ASGDGDVDAF AS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM666047 | 2e-92 | KM666047.1 Ananas bracteatus clone 51264b microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020112039.1 | 1e-174 | ethylene-responsive transcription factor-like protein At4g13040 isoform X2 | ||||
TrEMBL | M0T4P9 | 4e-89 | M0T4P9_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr6P06510_001 | 6e-90 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7516 | 35 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13040.2 | 1e-36 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Aco016102.1 |