PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco015974.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family bZIP
Protein Properties Length: 636aa    MW: 68160.5 Da    PI: 5.188
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco015974.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1673.2e-21526588163
                  XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                  e+elk++rrkq+NRe+ArrsR+RK+ae+eeL +++++L++eN +L+ e+++l+ke++ l s++
  Aco015974.1 526 ERELKKQRRKQSNRESARRSRLRKQAECEELGQRAESLKEENASLRAEVNRLRKEYEDLLSQN 588
                  89*********************************************************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077775.0E-24232325IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165961.2E-47364503No hitNo description
Gene3DG3DSA:1.20.5.1703.7E-16523587No hitNo description
PfamPF001707.5E-20526588IPR004827Basic-leucine zipper domain
SMARTSM003383.1E-22526590IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.576528591IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.19E-11529586No hitNo description
CDDcd147024.78E-24531581No hitNo description
PROSITE patternPS000360533548IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 636 aa     Download sequence    Send to blast
MGGSCGEGNG RERDAREEVG RVGRRPEKWT IVVGHAVEIS ISGLNVEAVI RSGIRQLTNE  60
EGLLWNSLAD YYACRGLFKK AQDVFEADLN AVSTAGEFGL IFEAYAQFEQ MLLAAKLDSS  120
DGEVDNGDLG DEEGGRLIKE RVKLFDGDPA MQLSAHARVL EIVDPMKAVG KPHTLWIAFA  180
RMYESNNRLD RAEEGFELRS QGEAISFGRN LGFTYCGAWS DRLGFLKPTP FMGSGEADAP  240
PKAPKASAAQ EQPPPTTSAP ATPVYPDWSG FQAYSPIPPP GFFHTSSPQA HPYMWGAQPI  300
MPYGTPPTPY VMYPPGGLYA HASMPPGSIP FSPYAMPSPN GNADGVGATA GGSEVDDKSS  360
EGKERSPLKR SKGSLGSLSM IMGKNNNEIG KTSGASANGA FSQSGESETE SSSEGSDANS  420
QNDSQAKTSG GQESLGAEAS QSGNVAHGSH NGISRTASQS KLNPAISIMP MPASGAIGGV  480
VSPTTNLNIG MDYWSTPSSS AIPAIPGKVP STAIPGALLP AEQWDERELK KQRRKQSNRE  540
SARRSRLRKQ AECEELGQRA ESLKEENASL RAEVNRLRKE YEDLLSQNAS LKEKLGQLQQ  600
KADDPRLDKK ERNYSDGNEK NHTDFNAKPD EGNQT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5mqf_M8e-2841197235419Pre-mRNA-splicing factor SYF1
5xjc_I8e-2841197235419Pre-mRNA-splicing factor SYF1
5yzg_I8e-2841197235419Pre-mRNA-splicing factor SYF1
5z56_I8e-2841197235419Pre-mRNA-splicing factor SYF1
5z57_I8e-2841197235419Pre-mRNA-splicing factor SYF1
6ff7_M8e-2841197235419Pre-mRNA-splicing factor SYF1
6icz_I8e-2841197235419Pre-mRNA-splicing factor SYF1
6id0_I8e-2841197235419Pre-mRNA-splicing factor SYF1
6id1_I8e-2841197235419Pre-mRNA-splicing factor SYF1
6qdv_T8e-2841197235419Pre-mRNA-splicing factor SYF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1542548RRSRLRK
2542549RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in responses to fungal pathogen infection and abiotic stresses. {ECO:0000269|Ref.1}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced during incompatible interaction with the fungal pathogen Puccinia striiformis (Ref.1). Induced by abscisic acid (ABA), ethylene, cold stress, salt stress and wounding (Ref.1). {ECO:0000269|Ref.1}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020112695.10.0bZIP transcription factor 16-like isoform X2
SwissprotB6E1071e-143BZP1B_WHEAT; bZIP transcription factor 1-B
TrEMBLA0A199UWR70.0A0A199UWR7_ANACO; Transcription factor HBP-1a
STRINGXP_008788461.11e-168(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21473796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.11e-103basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Appels R, et al.
    Shifting the limits in wheat research and breeding using a fully annotated reference genome.
    Science, 2018.
    [PMID:30115783]