PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco015558.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family C3H
Protein Properties Length: 439aa    MW: 47359.6 Da    PI: 7.8047
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco015558.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.62.4e-09114135426
                  ---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                  ++C++f++ G C+yG++C+F H+
  Aco015558.1 114 RPCKHFLA-GNCPYGENCRFLHS 135
                  79******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.1784167IPR000571Zinc finger, CCCH-type
SMARTSM003560.124366IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.638110137IPR000571Zinc finger, CCCH-type
SMARTSM003564.4E-6112136IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-6112135IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-7114135IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-6114135IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.109.0E-45138428IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003209.1E-6141180IPR001680WD40 repeat
SuperFamilySSF509781.83E-45141429IPR017986WD40-repeat-containing domain
PfamPF004002.7E-5143180IPR001680WD40 repeat
PROSITE profilePS5029418.536148350IPR017986WD40-repeat-containing domain
PROSITE profilePS5008213.65148189IPR001680WD40 repeat
PRINTSPR003202.0E-7167181IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780167181IPR019775WD40 repeat, conserved site
SMARTSM00320150220257IPR001680WD40 repeat
SMARTSM003200.011264301IPR001680WD40 repeat
PfamPF004000.052270301IPR001680WD40 repeat
PROSITE profilePS5008211.177271310IPR001680WD40 repeat
PROSITE patternPS006780288302IPR019775WD40 repeat, conserved site
PRINTSPR003202.0E-7288302IPR020472G-protein beta WD-40 repeat
SMARTSM003203.5E-4304341IPR001680WD40 repeat
PfamPF004000.0087306340IPR001680WD40 repeat
PRINTSPR003202.0E-7328342IPR020472G-protein beta WD-40 repeat
SMARTSM0032016345388IPR001680WD40 repeat
SMARTSM003206.7391428IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MDVETGDRYG NKRMHNRLGP SHPTSSSSSS AAAAAAAAVN DRANKVCYHW RAGRCNRHPC  60
PFLHSEPPAA PDGVGASKRP NNHWRNPNAG PPSNWGKGRG GGAAGRAPAK VPDRPCKHFL  120
AGNCPYGENC RFLHSWFVSD SFSLLTHLQG HQKVVTGIAL PSGSDKLYSG SKDESVRLWD  180
CQTGQCAGVI NVGGEVGCMI SEGPWIFIGI PNAVKAWNTQ TGTDLNLSGP TGQVYALVVG  240
NEMLFAGIQD GRILAWKFSA VGNCFEPAAS LVGHRLAVVS MVVGGMRLYS GSMDNTIKVW  300
DLATFQCIQT LSDHESVVMS VLCWDQFLLS CSLDQTIKVW AATETGNLEV TYTHKEEHGV  360
LTLCGMHDAQ AKPVLLCSWN DNSVRLYDLP SFSERGRIFS KEEVRAIQIG PGGLFFTGDG  420
TGELKVWKWL APNERSTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A5e-211274278323Tako8
6g6n_A5e-211274278323Tako8
6g6n_B5e-211274278323Tako8
6g6n_C5e-211274278323Tako8
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6614331e-179KM661433.1 Ananas bracteatus clone 43551 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020085123.10.0zinc finger CCCH domain-containing protein 17-like
SwissprotQ0DYP50.0C3H17_ORYSJ; Zinc finger CCCH domain-containing protein 17
TrEMBLA0A199W4U70.0A0A199W4U7_ANACO; Zinc finger CCCH domain-containing protein 17
STRINGXP_008795362.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20263442
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.10.0zinc finger WD40 repeat protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]