PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco015311.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MYB_related
Protein Properties Length: 676aa    MW: 78334.7 Da    PI: 7.8424
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco015311.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.82.5e-08476518146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      + +W +eE e l    kq+G+  WktIa ++g  + + ++k+ w+ 
      Aco015311.1 476 KRKWDPEELEALRLFQKQHGSQ-WKTIADELG--KHRVHVKDAWRR 518
                      569*******************.********9..678999998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007175.7E-4402473IPR001005SANT/Myb domain
PROSITE profilePS512949.177471524IPR017930Myb domain
SMARTSM007173.0E-4475522IPR001005SANT/Myb domain
SuperFamilySSF466896.07E-9476537IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.1E-10478529IPR009057Homeodomain-like
PfamPF139212.4E-12479537No hitNo description
PROSITE profilePS500908.037521589IPR017877Myb-like domain
SMARTSM007170.56525591IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-7530591IPR009057Homeodomain-like
SuperFamilySSF466899.19E-7569647IPR009057Homeodomain-like
PROSITE profilePS500907.886591644IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.600.001593645IPR009057Homeodomain-like
SMARTSM0071712595646IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 676 aa     Download sequence    Send to blast
MAEDEEKREK KRKRKKEKGW EGSAIGEFNG GDWVAINEEK VGEIEATEDG ELGLEKDGEK  60
EKKKRKKKEE DRREDGEIEV RAELQSKKKK KKDRVLAVYR SSETPRNEKI SFCGSGEEND  120
GKKWKKNKKK REEDGNERIE EEAGAELQLK KKKKKKKDRI SEVFSSSESP ENEKISFCES  180
TEEKDGKKKK ENKAEDGKEY TEEVVNAESQ AKKKKKKDRS LEVFTSSESL ENEKVSFSES  240
GGKDETLEKK ARKKSKGKAD LPMSEKESDE LSGKCGSPED NGKEDEEEKK KKRKLAEDSA  300
ELGKDDSVDP MDDTPIINKK RKKKKDRKGE LSNGTAGNDS ENKEKNDISS KKKDKNNGSN  360
STVSKPKKQG SRVRFSGVDE VFPFESDDGQ PEEEDGEIEL VQGKRFSVEE DNKVLEAIER  420
YIEINQLGEE GKQMLLKCRQ YPQLRNCWKE IGACLPYRPY TAIYYRAHVL LERSEKRKWD  480
PEELEALRLF QKQHGSQWKT IADELGKHRV HVKDAWRRIK PPNLKKGSWS QEEYQTLFDL  540
VNFDLRLKAF EEKQTKHGML RDNIAWEAIS EKMSTRRQNS CCIKWYDQLS SPMVSAGVWA  600
DTDDYRLVEA IQSLDASCIE DVDWDNLLEH RSGEVCRKRW NQMIRHIGGY KERPFIEQVE  660
VLANRYCPEM LEYRK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1914KKRKRK
21117RKRKKEK
3287294EKKKKRKL
4288293KKKKRK
5289294KKKRKL
6318322KKRKK
7318324KKRKKKK
8319327KRKKKKDRK
9320325RKKKKD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6654430.0KM665443.1 Ananas bracteatus clone 50585a microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020111030.10.0RNA polymerase I termination factor
TrEMBLA0A199UET10.0A0A199UET1_ANACO; Cyclin-D-binding Myb-like transcription factor 1
STRINGXP_008796528.11e-156(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54052635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.11e-123MYB_related family protein