PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco014708.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

ERF

Protein Properties

Length: 106aa MW: 11713.1 Da PI: 5.1967

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco014708.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	57	4.9e-18	25	77	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng.kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++k +g+W A+I + g + k ++lg+f+t+eeAa+a++ a+ +l+g Aco014708.1 25 SVYRGVTRRK-DGKWQARIGRV---GsRDaKDIYLGTFDTEEEAAEAYDIAAIELRG 77 78***999.9***997...43347***********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	7.17E-25	25	87	No hit	No description
SuperFamily	SSF54171	9.15E-20	25	87	IPR016177	DNA-binding domain
Pfam	PF00847	3.0E-12	25	77	IPR001471	AP2/ERF domain
SMART	SM00380	3.6E-28	26	91	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	2.1E-21	26	85	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	19.599	26	85	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.8E-9	27	38	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.8E-9	67	87	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 106 aa Download sequence Send to blast
MKTMSQEEFV AYVRRTSSCF SRGASVYRGV TRRKDGKWQA RIGRVGSRDA KDIYLGTFDT 60 EEEAAEAYDI AAIELRGVNA VTNFDISNYC DGGLKQLDAP CNLET*

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269\|PubMed:15988559}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020110672.1	1e-72	AP2-like ethylene-responsive transcription factor AIL1
Swissprot	Q6PQQ3	2e-35	AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBL	A0A199VGI1	2e-71	A0A199VGI1_ANACO; AP2-like ethylene-responsive transcription factor AIL1 (Fragment)
TrEMBL	A0A199VTD0	6e-70	A0A199VTD0_ANACO; AP2-like ethylene-responsive transcription factor AIL5
STRING	XP_008807712.1	1e-63	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7864	35	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57390.1	2e-27	AINTEGUMENTA-like 5

Link Out ? help Back to Top
Phytozome	Aco014708.1

Publications ? help Back to Top
Todd J,Post-Beittenmiller D,Jaworski JG KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana. Plant J., 1999. 17(2): p. 119-30 [PMID:10074711] Molitor AM,Bu Z,Yu Y,Shen WH Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes. PLoS Genet., 2014. 10(1): p. e1004091 [PMID:24465219] Feng J,Chen D,Berr A,Shen WH ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development. Plant Physiol., 2016. 172(3): p. 1746-1759 [PMID:27630184] Santuari L, et al. The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots. Plant Cell, 2016. 28(12): p. 2937-2951 [PMID:27920338] Du Y,Scheres B PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714 [PMID:29078398]