PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Aco014447.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 239aa MW: 26295.8 Da PI: 4.4147 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41.3 | 2.7e-13 | 60 | 105 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + e+ErrRR ++N+ + Lr ++Pk +K+sK ++L+ A++YI Lq Aco014447.1 60 NLEAERRRRGKLNTNILALRAIVPKI-----TKMSKESTLTDAIDYITLLQ 105 5689*********************7.....7***************9998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.475 | 55 | 104 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.09E-15 | 55 | 115 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.20E-11 | 57 | 108 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.1E-13 | 58 | 117 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.9E-11 | 59 | 105 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.9E-12 | 61 | 110 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 239 aa Download sequence Send to blast |
MPRRPRGAAA SQAAEAEAEA EAELEAELQG DFVDSVLDME GGIGGETPME KWEMRFKSKN 60 LEAERRRRGK LNTNILALRA IVPKITKMSK ESTLTDAIDY ITLLQKQVLD LQTELLETDG 120 DLIHKNEANE DEEGEKQRSP SSETVAPSVT VQCQGQVELI PMGPNKYQLK IMCKNRMGQF 180 TKVLEALSCF NAEVAEISSV AFFGFSKSVF SVEVKEGEEG EIIELRNLLL ALVGASEN* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that plays a crucial role in tapetum development. Required for male fertility and pollen differentiation within the developing anther. Plays a major role in maintaining tapetum development, starting in early meiosis. Required for pollen mother cell meiosis. May regulate the anther-specific cysteine protease CP1 and lipid-transfer proteins C4 and C6 (PubMed:16141453). Required for anther development. Functions in parallel with GAMYB to regulate early anther development. Functions upstream of the transcription factor TDR and may positively regulate its transcription (PubMed:20590996). {ECO:0000269|PubMed:16141453, ECO:0000269|PubMed:20590996}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020081804.1 | 1e-174 | transcription factor UDT1-like | ||||
Refseq | XP_020091321.1 | 1e-174 | transcription factor UDT1-like | ||||
Swissprot | B9FXT3 | 3e-46 | UDT1_ORYSJ; Transcription factor UDT1 | ||||
TrEMBL | A0A199UFJ0 | 1e-171 | A0A199UFJ0_ANACO; Transcription factor DYT1 | ||||
STRING | Pavir.Ba00709.1.p | 1e-60 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11982 | 30 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G21330.1 | 6e-20 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Aco014447.1 |
Publications ? help Back to Top | |||
---|---|---|---|
|