PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco014429.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

FAR1

Protein Properties

Length: 342aa MW: 38275.3 Da PI: 9.3632

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco014429.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	44.6	4.8e-14	96	181	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY+ YA+e+ F v+k+++k + +g+ t Cs++g+ ++ ++ r + + +t+C a+++v + d+ +++k+ leHnH+l+p Aco014429.1 96 NFYKYYAQEIEFAVVKRSTKMT--DGKATYVIIACSRHGNMYRTVTN---IRPHPLVAKTNCPARINVVINVDSSCVISKITLEHNHTLSP 181 6*************998887..9999********9998877...8888999*****************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.7E-11	96	181	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence Send to blast
MLETGRTRGR ERSAKADSAI KLDATSTEET IEDAAKLNDV VYPEHNDSYT ATYITSIPTL 60 YNVLQMNEER NSEVRDVNIS APEIGMAFIN FDAVFNFYKY YAQEIEFAVV KRSTKMTDGK 120 ATYVIIACSR HGNMYRTVTN IRPHPLVAKT NCPARINVVI NVDSSCVISK ITLEHNHTLS 180 PYKSRFFPCN RVIDTSIKRR LDLNDRAGIR LNKSFNSIIV EAGGYENLTF GKKDAHVYTI 240 AKFREFQAEL KELLHCETSL LSSTSNIAAE SDKKCELALR TLRDLKTKLE NTSSSKGSND 300 IEYSPIAATP SNDASNGRSN NQRVLSPLLV RSKGRPPSKR K*

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence Send to blast

MLETGRTRGR ERSAKADSAI KLDATSTEET IEDAAKLNDV VYPEHNDSYT ATYITSIPTL  60
YNVLQMNEER NSEVRDVNIS APEIGMAFIN FDAVFNFYKY YAQEIEFAVV KRSTKMTDGK  120
ATYVIIACSR HGNMYRTVTN IRPHPLVAKT NCPARINVVI NVDSSCVISK ITLEHNHTLS  180
PYKSRFFPCN RVIDTSIKRR LDLNDRAGIR LNKSFNSIIV EAGGYENLTF GKKDAHVYTI  240
AKFREFQAEL KELLHCETSL LSSTSNIAAE SDKKCELALR TLRDLKTKLE NTSSSKGSND  300
IEYSPIAATP SNDASNGRSN NQRVLSPLLV RSKGRPPSKR K*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020081201.1	1e-110	protein FAR-RED IMPAIRED RESPONSE 1-like
Refseq	XP_020099018.1	1e-108	protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBL	A0A199VIG2	1e-132	A0A199VIG2_ANACO; Protein FAR1-RELATED SEQUENCE 9

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP16056	5	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32250.4	8e-10	FAR1-related sequence 2

Link Out ? help Back to Top
Phytozome	Aco014429.1