PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco014163.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | C2H2 | ||||||||
Protein Properties | Length: 280aa MW: 31375.1 Da PI: 8.1416 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.6 | 0.0002 | 66 | 88 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H Aco014163.1 66 YSCSFCRREFRSAQALGGHMNVH 88 99*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.98E-6 | 63 | 92 | No hit | No description |
PROSITE profile | PS50157 | 11.219 | 66 | 93 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0098 | 66 | 88 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 68 | 88 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 280 aa Download sequence Send to blast |
MHSIIMEQTK YNWMWARRQL SEGPLLGSSI QRIATPSSYH ESWEEQAFEK DSIGHLGGYT 60 WPPRSYSCSF CRREFRSAQA LGGHMNVHRR DRARLKQLSS SPSSIEDQEN NQQDRQNTCT 120 PLGHAHQVSS LPYSTPSNPN CGAVASLISS RVSEDSDPTL VSPPSYSSSL IKENTKEQLL 180 PAEQSLSDPA QVVMLELNLG RENSKQREAN FCRKLRDKSR DEEEIISSKR RCIDAIFPLV 240 MKSSPGEQQN IRSQVLKISP GPVGELDLEL RLGSHPKAK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 5e-13 | 61 | 88 | 2 | 29 | superman protein |
2l1o_A | 5e-13 | 61 | 88 | 2 | 29 | Transcriptional regulator SUPERMAN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020101340.1 | 1e-166 | probable transcriptional regulator RABBIT EARS | ||||
TrEMBL | A0A2H3X4C3 | 3e-83 | A0A2H3X4C3_PHODC; zinc finger protein 11-like | ||||
STRING | XP_008778130.1 | 8e-84 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9594 | 28 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17810.1 | 3e-27 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Aco014163.1 |