PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco013781.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family AP2
Protein Properties Length: 512aa    MW: 54134.4 Da    PI: 8.4429
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco013781.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.21.7e-17138189156
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                  + ykGVr++    rWv+e+r+p   +k+ r+++g+f t+e+Aa+a++aa+++l+g+
  Aco013781.1 138 PVYKGVRRRG-ADRWVCEVREP---NKKSRIWVGTFPTPEMAARAHDAAALALRGA 189
                  68*****999.8******9998...347*************************995 PP
2AP255.21.7e-17342393156
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                  + ykGVr++    rWv+e+r+p   +k+ r+++g+f t+e+Aa+a++aa+++l+g+
  Aco013781.1 342 PVYKGVRRRG-ADRWVCEVREP---NKKSRIWVGTFPTPEMAARAHDAAALALRGA 393
                  68*****999.8******9998...347*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.4E-13138188IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-19139198IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.7E-28139198IPR001471AP2/ERF domain
PROSITE profilePS5103220.877139196IPR001471AP2/ERF domain
SMARTSM003803.1E-23139202IPR001471AP2/ERF domain
CDDcd000188.08E-12140198No hitNo description
PRINTSPR003671.6E-5140151IPR001471AP2/ERF domain
PRINTSPR003671.6E-5162178IPR001471AP2/ERF domain
PfamPF008471.4E-13342392IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-28343402IPR001471AP2/ERF domain
PROSITE profilePS5103220.877343400IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-19343402IPR016177DNA-binding domain
SMARTSM003803.1E-23343406IPR001471AP2/ERF domain
CDDcd000188.08E-12344402No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MPSGNRQDKI PSTCLQTVAS SLGGPLAGAS VPQWAVTGGC YFFIGTSAVR TTNYGTIPGF  60
SSDRSKKKDR NRVSQPRSQK YWGCSSEADR APSGRPTPYA APHSWHRFPP ASLQLTAWSA  120
PPPKRPAGRT KFRETRHPVY KGVRRRGADR WVCEVREPNK KSRIWVGTFP TPEMAARAHD  180
AAALALRGAS APLNFADSAS LILRSLPSSF SGPRDIARAA AEAAEAFPPP STADAAAAAA  240
ADESAPLLLQ SDPDAFGSAA CDVGEWTDVY YASMAEGLVM APPTVAGGGY GDWDDEDGGG  300
EVSLRSKKKI KMSETGSYRT AWSAPPPKRP AGRTKFRETR HPVYKGVRRR GADRWVCEVR  360
EPNKKSRIWV GTFPTPEMAA RAHDAAALAL RGASAPLNFA DSASLILRSL PSSFSGPRDI  420
ARAAAEAAEA FPPPSTADAA AAAAADESAP LLLQSDPDAF GSAACDVGEW TDVYYASMAE  480
GLVMAPPTVA GGGYGDWDDE DGGGEVSLWS Y*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020114725.11e-105uncharacterized protein LOC109728665
SwissprotQ9FJ935e-46DRE1D_ARATH; Dehydration-responsive element-binding protein 1D
TrEMBLA0A3S3NKA96e-97A0A3S3NKA9_9MAGN; AP2/ERF domain-containing protein
STRINGONIVA08G25500.16e-57(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25480.13e-28dehydration response element B1A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guttikonda SK, et al.
    Overexpression of AtDREB1D transcription factor improves drought tolerance in soybean.
    Mol. Biol. Rep., 2014. 41(12): p. 7995-8008
    [PMID:25192890]
  3. Zhang T, et al.
    Overexpression of a NF-YB3 transcription factor from Picea wilsonii confers tolerance to salinity and drought stress in transformed Arabidopsis thaliana.
    Plant Physiol. Biochem., 2015. 94: p. 153-64
    [PMID:26093308]
  4. Carlow CE, et al.
    Nuclear localization and transactivation by Vitis CBF transcription factors are regulated by combinations of conserved amino acid domains.
    Plant Physiol. Biochem., 2017. 118: p. 306-319
    [PMID:28675818]
  5. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]