PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco013675.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family AP2
Protein Properties Length: 502aa    MW: 55429.7 Da    PI: 7.8976
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco013675.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.46.4e-17166215155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Aco013675.1 166 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 215
                  78*******************......55************************997 PP
2AP2422.3e-13258308155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ k +g
  Aco013675.1 258 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEIEAARAYDKAAIKCNG 308
                  89********.7******5553..2.26**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.8E-9166215IPR001471AP2/ERF domain
SuperFamilySSF541716.21E-16166224IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.7E-17167224IPR001471AP2/ERF domain
CDDcd000182.19E-11167225No hitNo description
SMARTSM003801.3E-32167229IPR001471AP2/ERF domain
PROSITE profilePS5103217.794167223IPR001471AP2/ERF domain
PfamPF008475.5E-9258308IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-16258317IPR016177DNA-binding domain
CDDcd000182.06E-24258316No hitNo description
Gene3DG3DSA:3.30.730.101.6E-15259316IPR001471AP2/ERF domain
PROSITE profilePS5103215.382259316IPR001471AP2/ERF domain
SMARTSM003801.6E-31259322IPR001471AP2/ERF domain
PRINTSPR003677.9E-6260271IPR001471AP2/ERF domain
PRINTSPR003677.9E-6298318IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MMLDLNMAGD PSDFAEKPRS KGCGSDSATS NSSILNAEAG GNPADEDSST ARPTAATALQ  60
FRILRSSASA ELENEAEDEN CGSPESVVVT KQLFPLSAVS EWPQALQTAS SSNRSQWIDL  120
PFCHSDAQTE IKVFAQQPQP QPQLQPPQQQ QQQVKKSRRG PRSRSSQYRG VTFYRRTGRW  180
ESHIWDCGKQ VYLGGFDTAH AAARAYDRAA IKFRGVDADI NFNLSDYEED MKQMRNLTKE  240
EFVHILRRQS TGFSRGSSKY RGVTLHKCGR WEARMGQFLG KKYIYLGLFD SEIEAARAYD  300
KAAIKCNGRE AVTNFDPNTY EGELLADVDV EGQEVDLSLR ISQPVIQSPK RDHESVGIQF  360
QYGSLETSET KKSKASSPAT LRSKNHTFVD SSFQQASQPH NTVMLPEHPY SRTALGPAIF  420
TASEERAIEK RPEAPGTQSL PIWARMTHGR NTNIAPLLPL FSSAASSGFS TPTVTAMLAT  480
PRSSNAHFHL NPASSLNFFK S*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6639291e-116KM663929.1 Ananas bracteatus clone 48579c microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020087555.10.0floral homeotic protein APETALA 2-like isoform X1
RefseqXP_020087556.10.0floral homeotic protein APETALA 2-like isoform X1
RefseqXP_020102210.10.0floral homeotic protein APETALA 2-like isoform X1
RefseqXP_020102211.10.0floral homeotic protein APETALA 2-like isoform X1
SwissprotB8AXC31e-133AP21_ORYSI; APETALA2-like protein 1
TrEMBLA0A199UDC40.0A0A199UDC4_ANACO; Floral homeotic protein APETALA 2
STRINGXP_008789029.11e-168(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24483890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-106related to AP2.7